Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2827 and GFF2828 are separated by 16 nucleotides GFF2828 and GFF2829 are separated by 23 nucleotides GFF2829 and GFF2830 are separated by 177 nucleotides
GFF2827 - hypothetical protein, at 536,765 to 537,781
GFF2827
GFF2828 - 3-keto-5-aminohexanoate cleavage enzyme, at 537,798 to 538,724
GFF2828
GFF2829 - Kynurenine formamidase, at 538,748 to 539,521
GFF2829
GFF2830 - hypothetical protein, at 539,699 to 540,427
GFF2830
Position (kb) 537
538
539 Strain fitness (log2 ratio) -1
0
1 at 536.841 kb on + strand at 536.841 kb on + strand at 536.842 kb on - strand at 536.842 kb on - strand at 537.201 kb on + strand, within GFF2827 at 537.201 kb on + strand, within GFF2827 at 537.201 kb on + strand, within GFF2827 at 537.201 kb on + strand, within GFF2827 at 537.202 kb on - strand, within GFF2827 at 537.202 kb on - strand, within GFF2827 at 537.202 kb on - strand, within GFF2827 at 537.202 kb on - strand, within GFF2827 at 537.202 kb on - strand, within GFF2827 at 537.202 kb on - strand, within GFF2827 at 537.202 kb on - strand, within GFF2827 at 537.202 kb on - strand, within GFF2827 at 537.726 kb on + strand at 537.727 kb on - strand at 538.048 kb on + strand, within GFF2828 at 538.048 kb on + strand, within GFF2828 at 538.049 kb on - strand, within GFF2828 at 538.049 kb on - strand, within GFF2828 at 538.049 kb on - strand, within GFF2828 at 538.196 kb on - strand, within GFF2828 at 538.213 kb on + strand, within GFF2828 at 538.214 kb on - strand, within GFF2828 at 538.214 kb on - strand, within GFF2828 at 538.214 kb on - strand, within GFF2828 at 538.214 kb on - strand, within GFF2828 at 538.262 kb on - strand, within GFF2828 at 538.322 kb on - strand, within GFF2828 at 538.322 kb on - strand, within GFF2828 at 538.878 kb on + strand, within GFF2829 at 538.878 kb on + strand, within GFF2829 at 538.879 kb on - strand, within GFF2829 at 538.879 kb on - strand, within GFF2829 at 538.879 kb on - strand, within GFF2829 at 538.879 kb on - strand, within GFF2829 at 538.879 kb on - strand, within GFF2829 at 539.062 kb on + strand, within GFF2829 at 539.062 kb on + strand, within GFF2829 at 539.062 kb on + strand, within GFF2829 at 539.064 kb on + strand, within GFF2829 at 539.064 kb on + strand, within GFF2829 at 539.064 kb on + strand, within GFF2829 at 539.065 kb on - strand, within GFF2829 at 539.065 kb on - strand, within GFF2829 at 539.080 kb on - strand, within GFF2829 at 539.196 kb on + strand, within GFF2829 at 539.196 kb on + strand, within GFF2829 at 539.251 kb on - strand, within GFF2829 at 539.270 kb on - strand, within GFF2829 at 539.292 kb on + strand, within GFF2829 at 539.292 kb on + strand, within GFF2829 at 539.292 kb on + strand, within GFF2829 at 539.335 kb on + strand, within GFF2829 at 539.335 kb on + strand, within GFF2829 at 539.335 kb on + strand, within GFF2829 at 539.336 kb on - strand, within GFF2829 at 539.559 kb on + strand at 539.559 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 536,841 + -0.3 536,841 + +0.1 536,842 - +0.1 536,842 - -0.7 537,201 + GFF2827 0.43 +0.7 537,201 + GFF2827 0.43 -0.1 537,201 + GFF2827 0.43 +0.2 537,201 + GFF2827 0.43 +1.6 537,202 - GFF2827 0.43 +0.0 537,202 - GFF2827 0.43 -0.0 537,202 - GFF2827 0.43 -0.2 537,202 - GFF2827 0.43 +0.1 537,202 - GFF2827 0.43 +0.3 537,202 - GFF2827 0.43 +0.9 537,202 - GFF2827 0.43 +0.2 537,202 - GFF2827 0.43 +0.2 537,726 + -1.5 537,727 - -0.2 538,048 + GFF2828 0.27 +0.6 538,048 + GFF2828 0.27 +0.5 538,049 - GFF2828 0.27 -0.3 538,049 - GFF2828 0.27 -0.3 538,049 - GFF2828 0.27 -0.1 538,196 - GFF2828 0.43 +0.8 538,213 + GFF2828 0.45 -0.4 538,214 - GFF2828 0.45 +0.3 538,214 - GFF2828 0.45 -0.1 538,214 - GFF2828 0.45 -0.1 538,214 - GFF2828 0.45 +0.2 538,262 - GFF2828 0.50 -0.6 538,322 - GFF2828 0.57 -0.1 538,322 - GFF2828 0.57 -0.1 538,878 + GFF2829 0.17 -0.7 538,878 + GFF2829 0.17 +0.3 538,879 - GFF2829 0.17 -0.8 538,879 - GFF2829 0.17 -0.2 538,879 - GFF2829 0.17 -0.3 538,879 - GFF2829 0.17 -0.7 538,879 - GFF2829 0.17 -0.1 539,062 + GFF2829 0.41 +0.8 539,062 + GFF2829 0.41 -0.3 539,062 + GFF2829 0.41 +0.2 539,064 + GFF2829 0.41 -0.8 539,064 + GFF2829 0.41 +1.1 539,064 + GFF2829 0.41 +0.2 539,065 - GFF2829 0.41 -0.3 539,065 - GFF2829 0.41 -1.4 539,080 - GFF2829 0.43 -0.3 539,196 + GFF2829 0.58 +0.6 539,196 + GFF2829 0.58 -0.4 539,251 - GFF2829 0.65 +0.8 539,270 - GFF2829 0.67 +0.3 539,292 + GFF2829 0.70 +0.7 539,292 + GFF2829 0.70 -0.9 539,292 + GFF2829 0.70 -0.3 539,335 + GFF2829 0.76 +0.4 539,335 + GFF2829 0.76 -0.9 539,335 + GFF2829 0.76 -1.7 539,336 - GFF2829 0.76 -1.0 539,559 + +1.1 539,559 + -0.6
Or see this region's nucleotide sequence