Strain Fitness in Xanthobacter sp. DMC5 around GFF2826

Experiment: Methanol and casaminos (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2825 and GFF2826 are separated by 51 nucleotidesGFF2826 and GFF2827 are separated by 37 nucleotides GFF2825 - hypothetical protein, at 534,232 to 535,440 GFF2825 GFF2826 - hypothetical protein, at 535,492 to 536,727 GFF2826 GFF2827 - hypothetical protein, at 536,765 to 537,781 GFF2827 Position (kb) 535 536 537Strain fitness (log2 ratio) -2 -1 0 1at 534.652 kb on + strand, within GFF2825at 534.653 kb on - strand, within GFF2825at 534.755 kb on - strand, within GFF2825at 534.869 kb on + strand, within GFF2825at 534.870 kb on - strand, within GFF2825at 535.069 kb on + strand, within GFF2825at 535.069 kb on + strand, within GFF2825at 535.159 kb on + strand, within GFF2825at 535.159 kb on + strand, within GFF2825at 535.312 kb on + strand, within GFF2825at 535.312 kb on + strand, within GFF2825at 535.313 kb on - strand, within GFF2825at 535.313 kb on - strand, within GFF2825at 535.313 kb on - strand, within GFF2825at 535.313 kb on - strand, within GFF2825at 535.313 kb on - strand, within GFF2825at 535.360 kb on + strandat 535.361 kb on - strandat 535.399 kb on + strandat 535.399 kb on + strandat 535.399 kb on + strandat 535.399 kb on + strandat 535.399 kb on + strandat 535.399 kb on + strandat 535.400 kb on - strandat 535.400 kb on - strandat 535.400 kb on - strandat 535.400 kb on - strandat 535.400 kb on - strandat 535.400 kb on - strandat 535.400 kb on - strandat 535.400 kb on - strandat 535.400 kb on - strandat 535.400 kb on - strandat 535.401 kb on + strandat 535.402 kb on - strandat 535.438 kb on + strandat 535.438 kb on + strandat 535.439 kb on - strandat 535.595 kb on + strandat 535.647 kb on - strand, within GFF2826at 535.782 kb on - strand, within GFF2826at 535.799 kb on + strand, within GFF2826at 535.799 kb on + strand, within GFF2826at 535.800 kb on - strand, within GFF2826at 535.800 kb on - strand, within GFF2826at 535.800 kb on - strand, within GFF2826at 535.800 kb on - strand, within GFF2826at 535.889 kb on + strand, within GFF2826at 536.204 kb on + strand, within GFF2826at 536.204 kb on + strand, within GFF2826at 536.205 kb on - strand, within GFF2826at 536.205 kb on - strand, within GFF2826at 536.205 kb on - strand, within GFF2826at 536.222 kb on + strand, within GFF2826at 536.223 kb on - strand, within GFF2826at 536.223 kb on - strand, within GFF2826at 536.276 kb on + strand, within GFF2826at 536.276 kb on + strand, within GFF2826at 536.276 kb on + strand, within GFF2826at 536.276 kb on + strand, within GFF2826at 536.277 kb on - strand, within GFF2826at 536.277 kb on - strand, within GFF2826at 536.277 kb on - strand, within GFF2826at 536.277 kb on - strand, within GFF2826at 536.277 kb on - strand, within GFF2826at 536.418 kb on + strand, within GFF2826at 536.418 kb on + strand, within GFF2826at 536.428 kb on + strand, within GFF2826at 536.429 kb on - strand, within GFF2826at 536.429 kb on - strand, within GFF2826at 536.841 kb on + strandat 536.841 kb on + strandat 536.842 kb on - strandat 536.842 kb on - strandat 537.201 kb on + strand, within GFF2827at 537.201 kb on + strand, within GFF2827at 537.201 kb on + strand, within GFF2827at 537.201 kb on + strand, within GFF2827at 537.202 kb on - strand, within GFF2827at 537.202 kb on - strand, within GFF2827at 537.202 kb on - strand, within GFF2827at 537.202 kb on - strand, within GFF2827at 537.202 kb on - strand, within GFF2827at 537.202 kb on - strand, within GFF2827at 537.202 kb on - strand, within GFF2827at 537.202 kb on - strand, within GFF2827at 537.726 kb on + strandat 537.727 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
remove
534,652 + GFF2825 0.35 -0.4
534,653 - GFF2825 0.35 +0.2
534,755 - GFF2825 0.43 -0.1
534,869 + GFF2825 0.53 +0.6
534,870 - GFF2825 0.53 -0.0
535,069 + GFF2825 0.69 -0.0
535,069 + GFF2825 0.69 +0.3
535,159 + GFF2825 0.77 -0.9
535,159 + GFF2825 0.77 +0.0
535,312 + GFF2825 0.89 -0.3
535,312 + GFF2825 0.89 +0.1
535,313 - GFF2825 0.89 -0.4
535,313 - GFF2825 0.89 +0.3
535,313 - GFF2825 0.89 +0.5
535,313 - GFF2825 0.89 -0.3
535,313 - GFF2825 0.89 +0.2
535,360 + +1.1
535,361 - +0.4
535,399 + -0.6
535,399 + -1.2
535,399 + +0.2
535,399 + +0.1
535,399 + -0.6
535,399 + +0.2
535,400 - -0.4
535,400 - -2.0
535,400 - -0.1
535,400 - -0.7
535,400 - -0.2
535,400 - -0.6
535,400 - +0.4
535,400 - +0.5
535,400 - +0.5
535,400 - +0.3
535,401 + -0.3
535,402 - +0.1
535,438 + -0.1
535,438 + +1.1
535,439 - +0.4
535,595 + -0.3
535,647 - GFF2826 0.13 -0.8
535,782 - GFF2826 0.23 -0.1
535,799 + GFF2826 0.25 +0.1
535,799 + GFF2826 0.25 -0.3
535,800 - GFF2826 0.25 -0.9
535,800 - GFF2826 0.25 +0.2
535,800 - GFF2826 0.25 -0.2
535,800 - GFF2826 0.25 -0.3
535,889 + GFF2826 0.32 -0.5
536,204 + GFF2826 0.58 -0.4
536,204 + GFF2826 0.58 +0.3
536,205 - GFF2826 0.58 -0.1
536,205 - GFF2826 0.58 -0.4
536,205 - GFF2826 0.58 -0.9
536,222 + GFF2826 0.59 -0.8
536,223 - GFF2826 0.59 +0.5
536,223 - GFF2826 0.59 -1.1
536,276 + GFF2826 0.63 -0.8
536,276 + GFF2826 0.63 -0.6
536,276 + GFF2826 0.63 +0.7
536,276 + GFF2826 0.63 +1.1
536,277 - GFF2826 0.64 -0.1
536,277 - GFF2826 0.64 -1.0
536,277 - GFF2826 0.64 -0.4
536,277 - GFF2826 0.64 -0.5
536,277 - GFF2826 0.64 +0.6
536,418 + GFF2826 0.75 -0.3
536,418 + GFF2826 0.75 +0.6
536,428 + GFF2826 0.76 +0.6
536,429 - GFF2826 0.76 -0.4
536,429 - GFF2826 0.76 -0.4
536,841 + -0.3
536,841 + +0.1
536,842 - +0.1
536,842 - -0.7
537,201 + GFF2827 0.43 +0.7
537,201 + GFF2827 0.43 -0.1
537,201 + GFF2827 0.43 +0.2
537,201 + GFF2827 0.43 +1.6
537,202 - GFF2827 0.43 +0.0
537,202 - GFF2827 0.43 -0.0
537,202 - GFF2827 0.43 -0.2
537,202 - GFF2827 0.43 +0.1
537,202 - GFF2827 0.43 +0.3
537,202 - GFF2827 0.43 +0.9
537,202 - GFF2827 0.43 +0.2
537,202 - GFF2827 0.43 +0.2
537,726 + -1.5
537,727 - -0.2

Or see this region's nucleotide sequence