Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2815 and GFF2816 are separated by 9 nucleotides GFF2816 and GFF2817 are separated by 209 nucleotides GFF2817 and GFF2818 overlap by 35 nucleotides
GFF2815 - 1,4-dihydroxy-2-naphthoyl-CoA synthase, at 524,304 to 525,086
GFF2815
GFF2816 - 3-oxoacyl-[acyl-carrier-protein] reductase FabG, at 525,096 to 525,866
GFF2816
GFF2817 - hypothetical protein, at 526,076 to 526,642
GFF2817
GFF2818 - Acyl-CoA dehydrogenase, at 526,608 to 527,774
GFF2818
Position (kb) 526
527 Strain fitness (log2 ratio) -1
0
1 at 525.077 kb on + strand at 525.078 kb on - strand at 525.078 kb on - strand at 525.079 kb on + strand at 525.079 kb on + strand at 525.079 kb on + strand at 525.079 kb on + strand at 525.079 kb on + strand at 525.242 kb on + strand, within GFF2816 at 525.243 kb on - strand, within GFF2816 at 525.243 kb on - strand, within GFF2816 at 525.400 kb on + strand, within GFF2816 at 525.401 kb on - strand, within GFF2816 at 525.667 kb on + strand, within GFF2816 at 525.667 kb on + strand, within GFF2816 at 525.668 kb on - strand, within GFF2816 at 525.668 kb on - strand, within GFF2816 at 525.834 kb on + strand at 525.835 kb on - strand at 525.930 kb on + strand at 525.931 kb on - strand at 525.931 kb on - strand at 525.931 kb on - strand at 525.941 kb on + strand at 525.942 kb on - strand at 526.196 kb on + strand, within GFF2817 at 526.196 kb on + strand, within GFF2817 at 526.291 kb on - strand, within GFF2817 at 526.346 kb on + strand, within GFF2817 at 526.346 kb on + strand, within GFF2817 at 526.346 kb on + strand, within GFF2817 at 526.347 kb on - strand, within GFF2817 at 526.347 kb on - strand, within GFF2817 at 526.347 kb on - strand, within GFF2817 at 526.347 kb on - strand, within GFF2817 at 526.347 kb on - strand, within GFF2817 at 526.454 kb on + strand, within GFF2817 at 526.454 kb on + strand, within GFF2817 at 526.454 kb on + strand, within GFF2817 at 526.455 kb on - strand, within GFF2817 at 526.512 kb on - strand, within GFF2817 at 526.512 kb on - strand, within GFF2817 at 526.512 kb on - strand, within GFF2817 at 526.687 kb on + strand at 526.687 kb on + strand at 526.687 kb on + strand at 526.688 kb on - strand at 526.688 kb on - strand at 526.714 kb on + strand at 526.715 kb on - strand at 526.744 kb on + strand, within GFF2818 at 526.894 kb on + strand, within GFF2818 at 526.894 kb on + strand, within GFF2818 at 526.895 kb on - strand, within GFF2818 at 526.982 kb on - strand, within GFF2818 at 527.148 kb on + strand, within GFF2818 at 527.148 kb on + strand, within GFF2818 at 527.148 kb on + strand, within GFF2818 at 527.149 kb on - strand, within GFF2818 at 527.149 kb on - strand, within GFF2818 at 527.149 kb on - strand, within GFF2818 at 527.149 kb on - strand, within GFF2818 at 527.149 kb on - strand, within GFF2818 at 527.149 kb on - strand, within GFF2818 at 527.149 kb on - strand, within GFF2818 at 527.335 kb on + strand, within GFF2818 at 527.335 kb on + strand, within GFF2818 at 527.335 kb on + strand, within GFF2818 at 527.336 kb on - strand, within GFF2818 at 527.336 kb on - strand, within GFF2818 at 527.336 kb on - strand, within GFF2818 at 527.336 kb on - strand, within GFF2818 at 527.336 kb on - strand, within GFF2818 at 527.336 kb on - strand, within GFF2818 at 527.449 kb on + strand, within GFF2818 at 527.450 kb on - strand, within GFF2818 at 527.602 kb on + strand, within GFF2818 at 527.602 kb on + strand, within GFF2818 at 527.602 kb on + strand, within GFF2818 at 527.603 kb on - strand, within GFF2818 at 527.603 kb on - strand, within GFF2818
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 525,077 + -0.5 525,078 - -0.3 525,078 - -1.1 525,079 + -0.1 525,079 + -0.5 525,079 + -0.3 525,079 + +1.0 525,079 + -1.0 525,242 + GFF2816 0.19 +0.4 525,243 - GFF2816 0.19 -0.4 525,243 - GFF2816 0.19 -0.4 525,400 + GFF2816 0.39 +0.0 525,401 - GFF2816 0.40 -1.7 525,667 + GFF2816 0.74 +0.2 525,667 + GFF2816 0.74 +0.3 525,668 - GFF2816 0.74 -0.6 525,668 - GFF2816 0.74 -0.3 525,834 + -0.9 525,835 - -0.6 525,930 + +0.9 525,931 - -0.1 525,931 - -0.1 525,931 - -0.1 525,941 + +0.3 525,942 - -0.7 526,196 + GFF2817 0.21 +0.3 526,196 + GFF2817 0.21 +0.6 526,291 - GFF2817 0.38 -0.5 526,346 + GFF2817 0.48 -0.1 526,346 + GFF2817 0.48 -0.5 526,346 + GFF2817 0.48 +0.9 526,347 - GFF2817 0.48 -0.3 526,347 - GFF2817 0.48 +0.9 526,347 - GFF2817 0.48 -0.7 526,347 - GFF2817 0.48 -0.3 526,347 - GFF2817 0.48 +0.7 526,454 + GFF2817 0.67 +1.3 526,454 + GFF2817 0.67 -0.7 526,454 + GFF2817 0.67 -0.1 526,455 - GFF2817 0.67 +0.2 526,512 - GFF2817 0.77 +1.1 526,512 - GFF2817 0.77 -0.8 526,512 - GFF2817 0.77 +0.5 526,687 + -0.1 526,687 + +0.7 526,687 + +0.5 526,688 - -0.2 526,688 - +0.1 526,714 + +0.6 526,715 - -0.9 526,744 + GFF2818 0.12 -0.1 526,894 + GFF2818 0.25 -0.2 526,894 + GFF2818 0.25 -0.3 526,895 - GFF2818 0.25 +0.2 526,982 - GFF2818 0.32 +0.5 527,148 + GFF2818 0.46 -0.3 527,148 + GFF2818 0.46 -0.5 527,148 + GFF2818 0.46 +0.4 527,149 - GFF2818 0.46 +0.0 527,149 - GFF2818 0.46 -1.5 527,149 - GFF2818 0.46 +1.0 527,149 - GFF2818 0.46 -0.6 527,149 - GFF2818 0.46 -0.7 527,149 - GFF2818 0.46 -0.5 527,149 - GFF2818 0.46 +0.5 527,335 + GFF2818 0.62 +0.6 527,335 + GFF2818 0.62 +0.1 527,335 + GFF2818 0.62 +0.5 527,336 - GFF2818 0.62 -0.8 527,336 - GFF2818 0.62 +0.3 527,336 - GFF2818 0.62 -0.8 527,336 - GFF2818 0.62 -0.5 527,336 - GFF2818 0.62 -0.0 527,336 - GFF2818 0.62 -0.1 527,449 + GFF2818 0.72 +0.2 527,450 - GFF2818 0.72 -0.1 527,602 + GFF2818 0.85 +1.2 527,602 + GFF2818 0.85 -0.4 527,602 + GFF2818 0.85 -0.1 527,603 - GFF2818 0.85 +0.2 527,603 - GFF2818 0.85 -0.2
Or see this region's nucleotide sequence