Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2796 and GFF2797 are separated by 158 nucleotides GFF2797 and GFF2798 are separated by 48 nucleotides
GFF2796 - putative NADH-specific resorcinol 4-hydroxylase, at 500,480 to 502,009
GFF2796
GFF2797 - Biphenyl-2,3-diol 1,2-dioxygenase, at 502,168 to 503,136
GFF2797
GFF2798 - Proline/betaine transporter, at 503,185 to 504,489
GFF2798
Position (kb) 502
503
504 Strain fitness (log2 ratio) -2
-1
0
1 at 501.181 kb on + strand, within GFF2796 at 501.181 kb on + strand, within GFF2796 at 501.182 kb on - strand, within GFF2796 at 501.182 kb on - strand, within GFF2796 at 501.183 kb on + strand, within GFF2796 at 501.183 kb on + strand, within GFF2796 at 501.183 kb on + strand, within GFF2796 at 501.183 kb on + strand, within GFF2796 at 501.184 kb on - strand, within GFF2796 at 501.184 kb on - strand, within GFF2796 at 501.184 kb on - strand, within GFF2796 at 501.333 kb on + strand, within GFF2796 at 501.333 kb on + strand, within GFF2796 at 501.333 kb on + strand, within GFF2796 at 501.333 kb on + strand, within GFF2796 at 501.333 kb on + strand, within GFF2796 at 501.334 kb on - strand, within GFF2796 at 501.334 kb on - strand, within GFF2796 at 501.334 kb on - strand, within GFF2796 at 501.334 kb on - strand, within GFF2796 at 501.334 kb on - strand, within GFF2796 at 501.360 kb on + strand, within GFF2796 at 501.361 kb on - strand, within GFF2796 at 501.361 kb on - strand, within GFF2796 at 501.553 kb on - strand, within GFF2796 at 501.553 kb on - strand, within GFF2796 at 501.682 kb on - strand, within GFF2796 at 501.682 kb on - strand, within GFF2796 at 501.682 kb on - strand, within GFF2796 at 501.870 kb on + strand at 501.870 kb on + strand at 501.871 kb on - strand at 502.286 kb on + strand, within GFF2797 at 502.287 kb on - strand, within GFF2797 at 502.409 kb on + strand, within GFF2797 at 502.409 kb on + strand, within GFF2797 at 502.488 kb on - strand, within GFF2797 at 502.488 kb on - strand, within GFF2797 at 502.488 kb on - strand, within GFF2797 at 502.601 kb on + strand, within GFF2797 at 502.601 kb on + strand, within GFF2797 at 502.601 kb on + strand, within GFF2797 at 502.601 kb on + strand, within GFF2797 at 502.602 kb on - strand, within GFF2797 at 502.602 kb on - strand, within GFF2797 at 502.611 kb on - strand, within GFF2797 at 502.626 kb on - strand, within GFF2797 at 502.658 kb on + strand, within GFF2797 at 502.658 kb on + strand, within GFF2797 at 502.659 kb on - strand, within GFF2797 at 502.659 kb on - strand, within GFF2797 at 503.114 kb on + strand at 503.267 kb on + strand at 503.268 kb on - strand at 503.268 kb on - strand at 503.268 kb on - strand at 503.360 kb on + strand, within GFF2798 at 503.360 kb on + strand, within GFF2798 at 503.361 kb on - strand, within GFF2798 at 503.361 kb on - strand, within GFF2798 at 503.361 kb on - strand, within GFF2798 at 503.661 kb on - strand, within GFF2798 at 503.909 kb on + strand, within GFF2798 at 503.940 kb on - strand, within GFF2798 at 504.048 kb on - strand, within GFF2798 at 504.048 kb on - strand, within GFF2798 at 504.048 kb on - strand, within GFF2798 at 504.048 kb on - strand, within GFF2798
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 501,181 + GFF2796 0.46 -0.2 501,181 + GFF2796 0.46 -0.3 501,182 - GFF2796 0.46 -0.0 501,182 - GFF2796 0.46 +1.2 501,183 + GFF2796 0.46 +0.2 501,183 + GFF2796 0.46 -0.1 501,183 + GFF2796 0.46 +0.4 501,183 + GFF2796 0.46 +1.0 501,184 - GFF2796 0.46 -0.3 501,184 - GFF2796 0.46 -1.3 501,184 - GFF2796 0.46 +0.8 501,333 + GFF2796 0.56 -0.9 501,333 + GFF2796 0.56 +0.7 501,333 + GFF2796 0.56 -1.5 501,333 + GFF2796 0.56 -0.0 501,333 + GFF2796 0.56 +0.3 501,334 - GFF2796 0.56 -0.3 501,334 - GFF2796 0.56 -0.5 501,334 - GFF2796 0.56 -0.5 501,334 - GFF2796 0.56 +0.3 501,334 - GFF2796 0.56 -0.8 501,360 + GFF2796 0.58 -0.0 501,361 - GFF2796 0.58 -0.5 501,361 - GFF2796 0.58 +0.3 501,553 - GFF2796 0.70 -0.3 501,553 - GFF2796 0.70 -0.2 501,682 - GFF2796 0.79 -0.3 501,682 - GFF2796 0.79 -0.6 501,682 - GFF2796 0.79 -0.4 501,870 + +0.1 501,870 + +0.0 501,871 - -0.2 502,286 + GFF2797 0.12 -0.7 502,287 - GFF2797 0.12 -0.2 502,409 + GFF2797 0.25 +0.6 502,409 + GFF2797 0.25 -0.6 502,488 - GFF2797 0.33 +0.5 502,488 - GFF2797 0.33 +0.5 502,488 - GFF2797 0.33 -0.3 502,601 + GFF2797 0.45 +0.2 502,601 + GFF2797 0.45 +0.3 502,601 + GFF2797 0.45 -0.2 502,601 + GFF2797 0.45 +0.5 502,602 - GFF2797 0.45 +0.2 502,602 - GFF2797 0.45 +0.0 502,611 - GFF2797 0.46 -1.1 502,626 - GFF2797 0.47 +0.9 502,658 + GFF2797 0.51 -0.3 502,658 + GFF2797 0.51 -0.8 502,659 - GFF2797 0.51 -0.0 502,659 - GFF2797 0.51 +0.9 503,114 + -0.8 503,267 + -0.5 503,268 - +0.4 503,268 - -0.1 503,268 - -0.6 503,360 + GFF2798 0.13 +0.6 503,360 + GFF2798 0.13 -0.1 503,361 - GFF2798 0.13 -2.6 503,361 - GFF2798 0.13 -1.4 503,361 - GFF2798 0.13 +0.4 503,661 - GFF2798 0.36 +0.5 503,909 + GFF2798 0.55 +0.5 503,940 - GFF2798 0.58 +0.4 504,048 - GFF2798 0.66 +0.2 504,048 - GFF2798 0.66 +0.3 504,048 - GFF2798 0.66 +0.4 504,048 - GFF2798 0.66 -0.3
Or see this region's nucleotide sequence