Strain Fitness in Xanthobacter sp. DMC5 around GFF2795

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2794 and GFF2795 are separated by 127 nucleotidesGFF2795 and GFF2796 are separated by 43 nucleotides GFF2794 - hypothetical protein, at 498,636 to 499,463 GFF2794 GFF2795 - hypothetical protein, at 499,591 to 500,436 GFF2795 GFF2796 - putative NADH-specific resorcinol 4-hydroxylase, at 500,480 to 502,009 GFF2796 Position (kb) 499 500 501Strain fitness (log2 ratio) -1 0 1at 498.637 kb on + strandat 498.637 kb on + strandat 498.638 kb on - strandat 498.670 kb on - strandat 498.768 kb on + strand, within GFF2794at 498.768 kb on + strand, within GFF2794at 498.768 kb on + strand, within GFF2794at 498.769 kb on - strand, within GFF2794at 498.873 kb on - strand, within GFF2794at 498.991 kb on + strand, within GFF2794at 498.992 kb on - strand, within GFF2794at 499.055 kb on - strand, within GFF2794at 499.108 kb on + strand, within GFF2794at 499.108 kb on + strand, within GFF2794at 499.108 kb on + strand, within GFF2794at 499.198 kb on + strand, within GFF2794at 499.199 kb on - strand, within GFF2794at 499.199 kb on - strand, within GFF2794at 499.267 kb on + strand, within GFF2794at 499.267 kb on + strand, within GFF2794at 499.267 kb on + strand, within GFF2794at 499.268 kb on - strand, within GFF2794at 499.268 kb on - strand, within GFF2794at 499.268 kb on - strand, within GFF2794at 499.268 kb on - strand, within GFF2794at 499.268 kb on - strand, within GFF2794at 499.268 kb on - strand, within GFF2794at 499.268 kb on - strand, within GFF2794at 499.300 kb on + strand, within GFF2794at 499.301 kb on - strand, within GFF2794at 499.522 kb on + strandat 499.523 kb on - strandat 499.523 kb on - strandat 499.523 kb on - strandat 499.523 kb on - strandat 499.592 kb on + strandat 499.763 kb on + strand, within GFF2795at 499.763 kb on + strand, within GFF2795at 499.763 kb on + strand, within GFF2795at 499.763 kb on + strand, within GFF2795at 499.980 kb on - strand, within GFF2795at 499.980 kb on - strand, within GFF2795at 500.069 kb on + strand, within GFF2795at 500.136 kb on - strand, within GFF2795at 500.199 kb on - strand, within GFF2795at 500.199 kb on - strand, within GFF2795at 500.199 kb on - strand, within GFF2795at 500.397 kb on - strandat 500.571 kb on + strandat 500.571 kb on + strandat 500.571 kb on + strandat 500.572 kb on - strandat 500.960 kb on - strand, within GFF2796at 500.960 kb on - strand, within GFF2796at 500.961 kb on + strand, within GFF2796at 500.961 kb on + strand, within GFF2796at 500.961 kb on + strand, within GFF2796at 500.962 kb on - strand, within GFF2796at 500.962 kb on - strand, within GFF2796at 500.962 kb on - strand, within GFF2796at 500.994 kb on + strand, within GFF2796at 500.995 kb on - strand, within GFF2796at 500.995 kb on - strand, within GFF2796at 500.995 kb on - strand, within GFF2796at 500.998 kb on + strand, within GFF2796at 501.181 kb on + strand, within GFF2796at 501.181 kb on + strand, within GFF2796at 501.182 kb on - strand, within GFF2796at 501.182 kb on - strand, within GFF2796at 501.183 kb on + strand, within GFF2796at 501.183 kb on + strand, within GFF2796at 501.183 kb on + strand, within GFF2796at 501.183 kb on + strand, within GFF2796at 501.184 kb on - strand, within GFF2796at 501.184 kb on - strand, within GFF2796at 501.184 kb on - strand, within GFF2796at 501.333 kb on + strand, within GFF2796at 501.333 kb on + strand, within GFF2796at 501.333 kb on + strand, within GFF2796at 501.333 kb on + strand, within GFF2796at 501.333 kb on + strand, within GFF2796at 501.334 kb on - strand, within GFF2796at 501.334 kb on - strand, within GFF2796at 501.334 kb on - strand, within GFF2796at 501.334 kb on - strand, within GFF2796at 501.334 kb on - strand, within GFF2796at 501.360 kb on + strand, within GFF2796at 501.361 kb on - strand, within GFF2796at 501.361 kb on - strand, within GFF2796

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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498,637 + +0.7
498,637 + -0.6
498,638 - -1.2
498,670 - +1.0
498,768 + GFF2794 0.16 -0.2
498,768 + GFF2794 0.16 +0.1
498,768 + GFF2794 0.16 -0.2
498,769 - GFF2794 0.16 -0.7
498,873 - GFF2794 0.29 +0.1
498,991 + GFF2794 0.43 -0.7
498,992 - GFF2794 0.43 +0.5
499,055 - GFF2794 0.51 +0.2
499,108 + GFF2794 0.57 +0.7
499,108 + GFF2794 0.57 -0.1
499,108 + GFF2794 0.57 -0.3
499,198 + GFF2794 0.68 +0.2
499,199 - GFF2794 0.68 +0.1
499,199 - GFF2794 0.68 +0.3
499,267 + GFF2794 0.76 -0.2
499,267 + GFF2794 0.76 -0.8
499,267 + GFF2794 0.76 -0.6
499,268 - GFF2794 0.76 -1.3
499,268 - GFF2794 0.76 -0.4
499,268 - GFF2794 0.76 +0.3
499,268 - GFF2794 0.76 -0.1
499,268 - GFF2794 0.76 -0.5
499,268 - GFF2794 0.76 -0.5
499,268 - GFF2794 0.76 +0.4
499,300 + GFF2794 0.80 +0.1
499,301 - GFF2794 0.80 +0.0
499,522 + +0.7
499,523 - +0.4
499,523 - -0.4
499,523 - +0.0
499,523 - -0.8
499,592 + +0.3
499,763 + GFF2795 0.20 +0.3
499,763 + GFF2795 0.20 +0.3
499,763 + GFF2795 0.20 +1.6
499,763 + GFF2795 0.20 -0.1
499,980 - GFF2795 0.46 +0.4
499,980 - GFF2795 0.46 -0.3
500,069 + GFF2795 0.57 -0.5
500,136 - GFF2795 0.64 +0.6
500,199 - GFF2795 0.72 +0.1
500,199 - GFF2795 0.72 +0.2
500,199 - GFF2795 0.72 -1.0
500,397 - -0.5
500,571 + -0.1
500,571 + +0.0
500,571 + -1.7
500,572 - -0.4
500,960 - GFF2796 0.31 +0.0
500,960 - GFF2796 0.31 -0.5
500,961 + GFF2796 0.31 +0.4
500,961 + GFF2796 0.31 +0.6
500,961 + GFF2796 0.31 -0.3
500,962 - GFF2796 0.32 -0.3
500,962 - GFF2796 0.32 -0.2
500,962 - GFF2796 0.32 +0.1
500,994 + GFF2796 0.34 +0.2
500,995 - GFF2796 0.34 -0.5
500,995 - GFF2796 0.34 -0.6
500,995 - GFF2796 0.34 -0.4
500,998 + GFF2796 0.34 +0.6
501,181 + GFF2796 0.46 -0.2
501,181 + GFF2796 0.46 -0.3
501,182 - GFF2796 0.46 -0.0
501,182 - GFF2796 0.46 +1.2
501,183 + GFF2796 0.46 +0.2
501,183 + GFF2796 0.46 -0.1
501,183 + GFF2796 0.46 +0.4
501,183 + GFF2796 0.46 +1.0
501,184 - GFF2796 0.46 -0.3
501,184 - GFF2796 0.46 -1.3
501,184 - GFF2796 0.46 +0.8
501,333 + GFF2796 0.56 -0.9
501,333 + GFF2796 0.56 +0.7
501,333 + GFF2796 0.56 -1.5
501,333 + GFF2796 0.56 -0.0
501,333 + GFF2796 0.56 +0.3
501,334 - GFF2796 0.56 -0.3
501,334 - GFF2796 0.56 -0.5
501,334 - GFF2796 0.56 -0.5
501,334 - GFF2796 0.56 +0.3
501,334 - GFF2796 0.56 -0.8
501,360 + GFF2796 0.58 -0.0
501,361 - GFF2796 0.58 -0.5
501,361 - GFF2796 0.58 +0.3

Or see this region's nucleotide sequence