Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2792 and GFF2793 are separated by 209 nucleotides GFF2793 and GFF2794 are separated by 222 nucleotides
GFF2792 - 2-(R)-hydroxypropyl-CoM dehydrogenase, at 495,523 to 496,323
GFF2792
GFF2793 - ATP-dependent RNA helicase DeaD, at 496,533 to 498,413
GFF2793
GFF2794 - hypothetical protein, at 498,636 to 499,463
GFF2794
Position (kb) 496
497
498
499 Strain fitness (log2 ratio) -1
0
1 at 496.144 kb on + strand, within GFF2792 at 496.144 kb on + strand, within GFF2792 at 496.231 kb on + strand, within GFF2792 at 496.231 kb on + strand, within GFF2792 at 496.232 kb on - strand, within GFF2792 at 496.232 kb on - strand, within GFF2792 at 496.232 kb on - strand, within GFF2792 at 496.356 kb on - strand at 496.437 kb on + strand at 496.438 kb on - strand at 496.482 kb on + strand at 496.482 kb on + strand at 496.482 kb on + strand at 496.483 kb on - strand at 496.664 kb on - strand at 496.798 kb on + strand, within GFF2793 at 497.692 kb on + strand, within GFF2793 at 497.692 kb on + strand, within GFF2793 at 497.692 kb on + strand, within GFF2793 at 497.693 kb on - strand, within GFF2793 at 497.695 kb on + strand, within GFF2793 at 497.695 kb on + strand, within GFF2793 at 497.696 kb on - strand, within GFF2793 at 497.696 kb on - strand, within GFF2793 at 497.700 kb on + strand, within GFF2793 at 497.700 kb on + strand, within GFF2793 at 497.700 kb on + strand, within GFF2793 at 497.700 kb on + strand, within GFF2793 at 497.700 kb on + strand, within GFF2793 at 497.701 kb on - strand, within GFF2793 at 497.701 kb on - strand, within GFF2793 at 497.701 kb on - strand, within GFF2793 at 497.701 kb on - strand, within GFF2793 at 497.701 kb on - strand, within GFF2793 at 497.756 kb on - strand, within GFF2793 at 497.818 kb on + strand, within GFF2793 at 497.819 kb on - strand, within GFF2793 at 498.125 kb on - strand, within GFF2793 at 498.359 kb on - strand at 498.428 kb on - strand at 498.437 kb on + strand at 498.488 kb on + strand at 498.488 kb on + strand at 498.488 kb on + strand at 498.489 kb on - strand at 498.491 kb on + strand at 498.506 kb on + strand at 498.507 kb on - strand at 498.531 kb on + strand at 498.531 kb on + strand at 498.531 kb on + strand at 498.531 kb on + strand at 498.531 kb on + strand at 498.532 kb on - strand at 498.532 kb on - strand at 498.637 kb on + strand at 498.637 kb on + strand at 498.638 kb on - strand at 498.670 kb on - strand at 498.768 kb on + strand, within GFF2794 at 498.768 kb on + strand, within GFF2794 at 498.768 kb on + strand, within GFF2794 at 498.769 kb on - strand, within GFF2794 at 498.873 kb on - strand, within GFF2794 at 498.991 kb on + strand, within GFF2794 at 498.992 kb on - strand, within GFF2794 at 499.055 kb on - strand, within GFF2794 at 499.108 kb on + strand, within GFF2794 at 499.108 kb on + strand, within GFF2794 at 499.108 kb on + strand, within GFF2794 at 499.198 kb on + strand, within GFF2794 at 499.199 kb on - strand, within GFF2794 at 499.199 kb on - strand, within GFF2794 at 499.267 kb on + strand, within GFF2794 at 499.267 kb on + strand, within GFF2794 at 499.267 kb on + strand, within GFF2794 at 499.268 kb on - strand, within GFF2794 at 499.268 kb on - strand, within GFF2794 at 499.268 kb on - strand, within GFF2794 at 499.268 kb on - strand, within GFF2794 at 499.268 kb on - strand, within GFF2794 at 499.268 kb on - strand, within GFF2794 at 499.268 kb on - strand, within GFF2794 at 499.300 kb on + strand, within GFF2794 at 499.301 kb on - strand, within GFF2794
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 496,144 + GFF2792 0.78 -0.1 496,144 + GFF2792 0.78 -0.2 496,231 + GFF2792 0.88 +0.3 496,231 + GFF2792 0.88 +0.1 496,232 - GFF2792 0.89 -0.1 496,232 - GFF2792 0.89 -0.1 496,232 - GFF2792 0.89 -0.3 496,356 - +0.6 496,437 + -0.4 496,438 - -0.3 496,482 + -0.1 496,482 + +0.3 496,482 + -1.0 496,483 - -0.4 496,664 - -0.3 496,798 + GFF2793 0.14 -0.3 497,692 + GFF2793 0.62 +0.5 497,692 + GFF2793 0.62 +0.4 497,692 + GFF2793 0.62 +0.3 497,693 - GFF2793 0.62 -0.1 497,695 + GFF2793 0.62 +0.8 497,695 + GFF2793 0.62 -0.6 497,696 - GFF2793 0.62 +1.1 497,696 - GFF2793 0.62 +0.3 497,700 + GFF2793 0.62 -1.1 497,700 + GFF2793 0.62 +1.2 497,700 + GFF2793 0.62 +1.2 497,700 + GFF2793 0.62 -0.2 497,700 + GFF2793 0.62 -0.0 497,701 - GFF2793 0.62 -0.4 497,701 - GFF2793 0.62 -1.0 497,701 - GFF2793 0.62 +1.1 497,701 - GFF2793 0.62 +0.5 497,701 - GFF2793 0.62 +0.1 497,756 - GFF2793 0.65 +0.1 497,818 + GFF2793 0.68 +0.1 497,819 - GFF2793 0.68 +0.3 498,125 - GFF2793 0.85 +0.7 498,359 - +0.5 498,428 - -0.4 498,437 + +0.2 498,488 + -0.2 498,488 + -1.2 498,488 + -1.0 498,489 - +0.5 498,491 + +0.1 498,506 + +0.3 498,507 - +0.1 498,531 + -0.3 498,531 + +1.1 498,531 + +0.3 498,531 + +0.3 498,531 + +0.1 498,532 - -0.4 498,532 - +0.6 498,637 + +0.7 498,637 + -0.6 498,638 - -1.2 498,670 - +1.0 498,768 + GFF2794 0.16 -0.2 498,768 + GFF2794 0.16 +0.1 498,768 + GFF2794 0.16 -0.2 498,769 - GFF2794 0.16 -0.7 498,873 - GFF2794 0.29 +0.1 498,991 + GFF2794 0.43 -0.7 498,992 - GFF2794 0.43 +0.5 499,055 - GFF2794 0.51 +0.2 499,108 + GFF2794 0.57 +0.7 499,108 + GFF2794 0.57 -0.1 499,108 + GFF2794 0.57 -0.3 499,198 + GFF2794 0.68 +0.2 499,199 - GFF2794 0.68 +0.1 499,199 - GFF2794 0.68 +0.3 499,267 + GFF2794 0.76 -0.2 499,267 + GFF2794 0.76 -0.8 499,267 + GFF2794 0.76 -0.6 499,268 - GFF2794 0.76 -1.3 499,268 - GFF2794 0.76 -0.4 499,268 - GFF2794 0.76 +0.3 499,268 - GFF2794 0.76 -0.1 499,268 - GFF2794 0.76 -0.5 499,268 - GFF2794 0.76 -0.5 499,268 - GFF2794 0.76 +0.4 499,300 + GFF2794 0.80 +0.1 499,301 - GFF2794 0.80 +0.0
Or see this region's nucleotide sequence