Strain Fitness in Xanthobacter sp. DMC5 around GFF2776

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2775 and GFF2776 are separated by 469 nucleotidesGFF2776 and GFF2777 are separated by 101 nucleotides GFF2775 - hypothetical protein, at 478,012 to 479,229 GFF2775 GFF2776 - Nitrilase, at 479,699 to 480,643 GFF2776 GFF2777 - Proline/betaine transporter, at 480,745 to 482,070 GFF2777 Position (kb) 479 480 481Strain fitness (log2 ratio) -2 -1 0 1 2at 478.840 kb on + strand, within GFF2775at 478.841 kb on - strand, within GFF2775at 478.851 kb on + strand, within GFF2775at 478.851 kb on + strand, within GFF2775at 478.930 kb on + strand, within GFF2775at 478.930 kb on + strand, within GFF2775at 478.931 kb on - strand, within GFF2775at 478.948 kb on + strand, within GFF2775at 478.949 kb on - strand, within GFF2775at 478.949 kb on - strand, within GFF2775at 479.032 kb on + strand, within GFF2775at 479.032 kb on + strand, within GFF2775at 479.032 kb on + strand, within GFF2775at 479.032 kb on + strand, within GFF2775at 479.033 kb on - strand, within GFF2775at 479.033 kb on - strand, within GFF2775at 479.033 kb on - strand, within GFF2775at 479.033 kb on - strand, within GFF2775at 479.083 kb on + strand, within GFF2775at 479.084 kb on - strand, within GFF2775at 479.084 kb on - strand, within GFF2775at 479.084 kb on - strand, within GFF2775at 479.084 kb on - strand, within GFF2775at 479.084 kb on - strand, within GFF2775at 479.084 kb on - strand, within GFF2775at 479.131 kb on + strandat 479.131 kb on + strandat 479.227 kb on + strandat 479.227 kb on + strandat 479.228 kb on - strandat 479.243 kb on - strandat 479.401 kb on + strandat 479.402 kb on - strandat 479.485 kb on + strandat 479.662 kb on + strandat 479.700 kb on + strandat 479.701 kb on - strandat 479.784 kb on + strandat 479.785 kb on - strandat 479.785 kb on - strandat 479.785 kb on - strandat 479.785 kb on - strandat 479.785 kb on - strandat 479.785 kb on - strandat 479.937 kb on - strand, within GFF2776at 479.956 kb on + strand, within GFF2776at 479.956 kb on + strand, within GFF2776at 479.956 kb on + strand, within GFF2776at 479.966 kb on - strand, within GFF2776at 479.992 kb on + strand, within GFF2776at 479.992 kb on + strand, within GFF2776at 479.992 kb on + strand, within GFF2776at 479.992 kb on + strand, within GFF2776at 479.992 kb on + strand, within GFF2776at 479.992 kb on + strand, within GFF2776at 479.993 kb on - strand, within GFF2776at 479.993 kb on - strand, within GFF2776at 479.993 kb on - strand, within GFF2776at 479.993 kb on - strand, within GFF2776at 479.993 kb on - strand, within GFF2776at 479.993 kb on - strand, within GFF2776at 479.993 kb on - strand, within GFF2776at 479.993 kb on - strand, within GFF2776at 479.993 kb on - strand, within GFF2776at 479.993 kb on - strand, within GFF2776at 479.993 kb on - strand, within GFF2776at 479.994 kb on + strand, within GFF2776at 479.994 kb on + strand, within GFF2776at 479.994 kb on + strand, within GFF2776at 479.994 kb on + strand, within GFF2776at 479.994 kb on + strand, within GFF2776at 479.994 kb on + strand, within GFF2776at 479.995 kb on - strand, within GFF2776at 479.995 kb on - strand, within GFF2776at 479.995 kb on - strand, within GFF2776at 480.090 kb on + strand, within GFF2776at 480.090 kb on + strand, within GFF2776at 480.090 kb on + strand, within GFF2776at 480.091 kb on - strand, within GFF2776at 480.091 kb on - strand, within GFF2776at 480.111 kb on + strand, within GFF2776at 480.111 kb on + strand, within GFF2776at 480.111 kb on + strand, within GFF2776at 480.111 kb on + strand, within GFF2776at 480.111 kb on + strand, within GFF2776at 480.111 kb on + strand, within GFF2776at 480.112 kb on - strand, within GFF2776at 480.112 kb on - strand, within GFF2776at 480.112 kb on - strand, within GFF2776at 480.112 kb on - strand, within GFF2776at 480.112 kb on - strand, within GFF2776at 480.138 kb on + strand, within GFF2776at 480.139 kb on - strand, within GFF2776at 480.139 kb on - strand, within GFF2776at 480.139 kb on - strand, within GFF2776at 480.139 kb on - strand, within GFF2776at 480.139 kb on - strand, within GFF2776at 480.182 kb on - strand, within GFF2776at 480.306 kb on + strand, within GFF2776at 480.307 kb on - strand, within GFF2776at 480.307 kb on - strand, within GFF2776at 480.307 kb on - strand, within GFF2776at 480.348 kb on + strand, within GFF2776at 480.348 kb on + strand, within GFF2776at 480.348 kb on + strand, within GFF2776at 480.349 kb on - strand, within GFF2776at 480.349 kb on - strand, within GFF2776at 480.423 kb on + strand, within GFF2776at 480.423 kb on + strand, within GFF2776at 480.424 kb on - strand, within GFF2776at 480.460 kb on + strand, within GFF2776at 480.461 kb on - strand, within GFF2776at 480.461 kb on - strand, within GFF2776at 480.461 kb on - strand, within GFF2776at 480.831 kb on - strandat 480.831 kb on - strandat 480.966 kb on + strand, within GFF2777at 481.059 kb on + strand, within GFF2777at 481.060 kb on - strand, within GFF2777at 481.082 kb on + strand, within GFF2777at 481.178 kb on + strand, within GFF2777at 481.178 kb on + strand, within GFF2777at 481.179 kb on - strand, within GFF2777at 481.179 kb on - strand, within GFF2777at 481.179 kb on - strand, within GFF2777at 481.179 kb on - strand, within GFF2777at 481.259 kb on + strand, within GFF2777at 481.271 kb on + strand, within GFF2777at 481.271 kb on + strand, within GFF2777at 481.271 kb on + strand, within GFF2777at 481.274 kb on + strand, within GFF2777at 481.275 kb on - strand, within GFF2777at 481.391 kb on + strand, within GFF2777at 481.391 kb on + strand, within GFF2777at 481.392 kb on - strand, within GFF2777at 481.392 kb on - strand, within GFF2777at 481.392 kb on - strand, within GFF2777at 481.392 kb on - strand, within GFF2777at 481.392 kb on - strand, within GFF2777at 481.424 kb on + strand, within GFF2777at 481.424 kb on + strand, within GFF2777at 481.424 kb on + strand, within GFF2777at 481.424 kb on + strand, within GFF2777at 481.424 kb on + strand, within GFF2777at 481.424 kb on + strand, within GFF2777at 481.424 kb on + strand, within GFF2777at 481.424 kb on + strand, within GFF2777at 481.424 kb on + strand, within GFF2777at 481.425 kb on - strand, within GFF2777at 481.425 kb on - strand, within GFF2777at 481.425 kb on - strand, within GFF2777at 481.425 kb on - strand, within GFF2777at 481.425 kb on - strand, within GFF2777at 481.425 kb on - strand, within GFF2777at 481.619 kb on + strand, within GFF2777at 481.619 kb on + strand, within GFF2777at 481.619 kb on + strand, within GFF2777at 481.619 kb on + strand, within GFF2777at 481.619 kb on + strand, within GFF2777at 481.619 kb on + strand, within GFF2777at 481.619 kb on + strand, within GFF2777at 481.620 kb on - strand, within GFF2777at 481.620 kb on - strand, within GFF2777at 481.620 kb on - strand, within GFF2777at 481.620 kb on - strand, within GFF2777at 481.620 kb on - strand, within GFF2777at 481.620 kb on - strand, within GFF2777

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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478,840 + GFF2775 0.68 -0.5
478,841 - GFF2775 0.68 -1.0
478,851 + GFF2775 0.69 -0.5
478,851 + GFF2775 0.69 +0.7
478,930 + GFF2775 0.75 +0.0
478,930 + GFF2775 0.75 -0.0
478,931 - GFF2775 0.75 -0.4
478,948 + GFF2775 0.77 -2.7
478,949 - GFF2775 0.77 -0.3
478,949 - GFF2775 0.77 +1.1
479,032 + GFF2775 0.84 +0.1
479,032 + GFF2775 0.84 -0.8
479,032 + GFF2775 0.84 -0.4
479,032 + GFF2775 0.84 +0.7
479,033 - GFF2775 0.84 -0.3
479,033 - GFF2775 0.84 +0.2
479,033 - GFF2775 0.84 +1.0
479,033 - GFF2775 0.84 -0.8
479,083 + GFF2775 0.88 -1.4
479,084 - GFF2775 0.88 +0.2
479,084 - GFF2775 0.88 -0.1
479,084 - GFF2775 0.88 -0.2
479,084 - GFF2775 0.88 -0.0
479,084 - GFF2775 0.88 -0.2
479,084 - GFF2775 0.88 -0.8
479,131 + +0.1
479,131 + +1.0
479,227 + -1.5
479,227 + +0.1
479,228 - -0.1
479,243 - +0.3
479,401 + -0.3
479,402 - -1.6
479,485 + +0.2
479,662 + -1.7
479,700 + +0.3
479,701 - -0.5
479,784 + +0.5
479,785 - +0.4
479,785 - -0.2
479,785 - -0.5
479,785 - -0.4
479,785 - -0.4
479,785 - +0.4
479,937 - GFF2776 0.25 -0.0
479,956 + GFF2776 0.27 +0.5
479,956 + GFF2776 0.27 +0.7
479,956 + GFF2776 0.27 -1.3
479,966 - GFF2776 0.28 +0.6
479,992 + GFF2776 0.31 +0.5
479,992 + GFF2776 0.31 -0.8
479,992 + GFF2776 0.31 +0.7
479,992 + GFF2776 0.31 -0.1
479,992 + GFF2776 0.31 -0.1
479,992 + GFF2776 0.31 -0.7
479,993 - GFF2776 0.31 +1.2
479,993 - GFF2776 0.31 +0.1
479,993 - GFF2776 0.31 +1.1
479,993 - GFF2776 0.31 -0.3
479,993 - GFF2776 0.31 -0.7
479,993 - GFF2776 0.31 -1.1
479,993 - GFF2776 0.31 +0.6
479,993 - GFF2776 0.31 -1.7
479,993 - GFF2776 0.31 +1.4
479,993 - GFF2776 0.31 +0.6
479,993 - GFF2776 0.31 -1.3
479,994 + GFF2776 0.31 +0.3
479,994 + GFF2776 0.31 -0.3
479,994 + GFF2776 0.31 -0.7
479,994 + GFF2776 0.31 +1.5
479,994 + GFF2776 0.31 -0.5
479,994 + GFF2776 0.31 +0.4
479,995 - GFF2776 0.31 -0.5
479,995 - GFF2776 0.31 +0.2
479,995 - GFF2776 0.31 -0.6
480,090 + GFF2776 0.41 +0.6
480,090 + GFF2776 0.41 +0.1
480,090 + GFF2776 0.41 -0.8
480,091 - GFF2776 0.41 -0.6
480,091 - GFF2776 0.41 -0.3
480,111 + GFF2776 0.44 -0.7
480,111 + GFF2776 0.44 +0.6
480,111 + GFF2776 0.44 +0.6
480,111 + GFF2776 0.44 -0.5
480,111 + GFF2776 0.44 +0.0
480,111 + GFF2776 0.44 +0.5
480,112 - GFF2776 0.44 +0.0
480,112 - GFF2776 0.44 +0.3
480,112 - GFF2776 0.44 +0.3
480,112 - GFF2776 0.44 -0.8
480,112 - GFF2776 0.44 -0.1
480,138 + GFF2776 0.46 -0.7
480,139 - GFF2776 0.47 +0.4
480,139 - GFF2776 0.47 +0.3
480,139 - GFF2776 0.47 -1.0
480,139 - GFF2776 0.47 -0.2
480,139 - GFF2776 0.47 +0.2
480,182 - GFF2776 0.51 -0.1
480,306 + GFF2776 0.64 +2.2
480,307 - GFF2776 0.64 +0.5
480,307 - GFF2776 0.64 +1.3
480,307 - GFF2776 0.64 +0.1
480,348 + GFF2776 0.69 -0.0
480,348 + GFF2776 0.69 -0.1
480,348 + GFF2776 0.69 +0.2
480,349 - GFF2776 0.69 +0.5
480,349 - GFF2776 0.69 -0.0
480,423 + GFF2776 0.77 +0.7
480,423 + GFF2776 0.77 +0.0
480,424 - GFF2776 0.77 +0.8
480,460 + GFF2776 0.81 +1.2
480,461 - GFF2776 0.81 -0.5
480,461 - GFF2776 0.81 -0.7
480,461 - GFF2776 0.81 +0.2
480,831 - -0.3
480,831 - -0.6
480,966 + GFF2777 0.17 +0.4
481,059 + GFF2777 0.24 +0.2
481,060 - GFF2777 0.24 +0.4
481,082 + GFF2777 0.25 +0.4
481,178 + GFF2777 0.33 +0.8
481,178 + GFF2777 0.33 +0.4
481,179 - GFF2777 0.33 -0.0
481,179 - GFF2777 0.33 -0.0
481,179 - GFF2777 0.33 -0.1
481,179 - GFF2777 0.33 -0.1
481,259 + GFF2777 0.39 +0.8
481,271 + GFF2777 0.40 -0.5
481,271 + GFF2777 0.40 -0.6
481,271 + GFF2777 0.40 -0.4
481,274 + GFF2777 0.40 +0.0
481,275 - GFF2777 0.40 +0.1
481,391 + GFF2777 0.49 -1.1
481,391 + GFF2777 0.49 -1.2
481,392 - GFF2777 0.49 -0.1
481,392 - GFF2777 0.49 +0.0
481,392 - GFF2777 0.49 +0.3
481,392 - GFF2777 0.49 -1.7
481,392 - GFF2777 0.49 -0.2
481,424 + GFF2777 0.51 -0.6
481,424 + GFF2777 0.51 -0.3
481,424 + GFF2777 0.51 -1.5
481,424 + GFF2777 0.51 -0.2
481,424 + GFF2777 0.51 -0.2
481,424 + GFF2777 0.51 -0.7
481,424 + GFF2777 0.51 +0.6
481,424 + GFF2777 0.51 -0.4
481,424 + GFF2777 0.51 -0.8
481,425 - GFF2777 0.51 +0.4
481,425 - GFF2777 0.51 +0.1
481,425 - GFF2777 0.51 -0.2
481,425 - GFF2777 0.51 +0.4
481,425 - GFF2777 0.51 -0.2
481,425 - GFF2777 0.51 -0.5
481,619 + GFF2777 0.66 +0.1
481,619 + GFF2777 0.66 -0.5
481,619 + GFF2777 0.66 +0.7
481,619 + GFF2777 0.66 -1.2
481,619 + GFF2777 0.66 +0.4
481,619 + GFF2777 0.66 -1.2
481,619 + GFF2777 0.66 +0.7
481,620 - GFF2777 0.66 +0.3
481,620 - GFF2777 0.66 +0.3
481,620 - GFF2777 0.66 +0.4
481,620 - GFF2777 0.66 -0.4
481,620 - GFF2777 0.66 +0.3
481,620 - GFF2777 0.66 +0.3

Or see this region's nucleotide sequence