Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2744 and GFF2745 overlap by 4 nucleotides GFF2745 and GFF2746 are separated by 317 nucleotides GFF2746 and GFF2747 are separated by 4 nucleotides
GFF2744 - Vitamin B12 import system permease protein BtuC, at 443,588 to 444,682
GFF2744
GFF2745 - Iron(3+)-hydroxamate import ATP-binding protein FhuC, at 444,679 to 445,431
GFF2745
GFF2746 - hypothetical protein, at 445,749 to 446,420
GFF2746
GFF2747 - Para-nitrobenzyl esterase, at 446,425 to 447,954
GFF2747
Position (kb) 444
445
446 Strain fitness (log2 ratio) -2
-1
0
1 at 443.762 kb on + strand, within GFF2744 at 443.763 kb on - strand, within GFF2744 at 443.763 kb on - strand, within GFF2744 at 444.029 kb on + strand, within GFF2744 at 444.029 kb on + strand, within GFF2744 at 444.029 kb on + strand, within GFF2744 at 444.029 kb on + strand, within GFF2744 at 444.030 kb on - strand, within GFF2744 at 444.030 kb on - strand, within GFF2744 at 444.030 kb on - strand, within GFF2744 at 444.030 kb on - strand, within GFF2744 at 444.030 kb on - strand, within GFF2744 at 444.592 kb on + strand at 444.592 kb on + strand at 444.901 kb on + strand, within GFF2745 at 444.944 kb on - strand, within GFF2745 at 445.273 kb on - strand, within GFF2745 at 445.335 kb on + strand, within GFF2745 at 445.335 kb on + strand, within GFF2745 at 445.335 kb on + strand, within GFF2745 at 445.336 kb on - strand, within GFF2745 at 445.362 kb on - strand at 445.537 kb on + strand at 445.537 kb on + strand at 445.537 kb on + strand at 445.537 kb on + strand at 445.538 kb on - strand at 445.538 kb on - strand at 445.538 kb on - strand at 445.538 kb on - strand at 445.538 kb on - strand at 445.538 kb on - strand at 445.612 kb on - strand at 445.662 kb on - strand at 445.718 kb on - strand at 445.718 kb on - strand at 445.735 kb on + strand at 445.735 kb on + strand at 445.735 kb on + strand at 445.736 kb on - strand at 445.736 kb on - strand at 445.736 kb on - strand at 445.842 kb on + strand, within GFF2746 at 445.858 kb on + strand, within GFF2746 at 445.858 kb on + strand, within GFF2746 at 445.858 kb on + strand, within GFF2746 at 445.859 kb on - strand, within GFF2746 at 445.859 kb on - strand, within GFF2746 at 445.902 kb on + strand, within GFF2746 at 445.903 kb on - strand, within GFF2746 at 445.903 kb on - strand, within GFF2746 at 445.953 kb on + strand, within GFF2746 at 445.953 kb on + strand, within GFF2746 at 445.953 kb on + strand, within GFF2746 at 445.953 kb on + strand, within GFF2746 at 445.953 kb on + strand, within GFF2746 at 446.050 kb on + strand, within GFF2746 at 446.051 kb on - strand, within GFF2746 at 446.051 kb on - strand, within GFF2746 at 446.071 kb on + strand, within GFF2746 at 446.071 kb on + strand, within GFF2746 at 446.071 kb on + strand, within GFF2746 at 446.167 kb on - strand, within GFF2746 at 446.167 kb on - strand, within GFF2746 at 446.318 kb on - strand, within GFF2746
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 443,762 + GFF2744 0.16 -1.1 443,763 - GFF2744 0.16 -0.2 443,763 - GFF2744 0.16 -0.8 444,029 + GFF2744 0.40 -0.3 444,029 + GFF2744 0.40 +0.3 444,029 + GFF2744 0.40 -0.1 444,029 + GFF2744 0.40 -0.0 444,030 - GFF2744 0.40 -1.0 444,030 - GFF2744 0.40 -2.0 444,030 - GFF2744 0.40 +0.4 444,030 - GFF2744 0.40 +0.2 444,030 - GFF2744 0.40 +0.1 444,592 + -1.3 444,592 + +1.2 444,901 + GFF2745 0.29 -0.1 444,944 - GFF2745 0.35 +0.5 445,273 - GFF2745 0.79 +0.0 445,335 + GFF2745 0.87 -0.6 445,335 + GFF2745 0.87 +1.0 445,335 + GFF2745 0.87 +0.3 445,336 - GFF2745 0.87 -0.1 445,362 - +1.1 445,537 + -0.7 445,537 + +0.3 445,537 + -0.0 445,537 + -0.3 445,538 - -0.2 445,538 - +0.3 445,538 - -0.0 445,538 - +0.5 445,538 - -0.1 445,538 - +0.3 445,612 - -0.1 445,662 - -0.3 445,718 - +0.3 445,718 - -0.5 445,735 + -0.8 445,735 + +0.3 445,735 + -0.1 445,736 - +0.1 445,736 - -0.1 445,736 - -0.3 445,842 + GFF2746 0.14 +0.5 445,858 + GFF2746 0.16 -0.2 445,858 + GFF2746 0.16 -0.4 445,858 + GFF2746 0.16 +0.8 445,859 - GFF2746 0.16 -2.3 445,859 - GFF2746 0.16 +1.3 445,902 + GFF2746 0.23 -0.6 445,903 - GFF2746 0.23 -0.1 445,903 - GFF2746 0.23 -1.0 445,953 + GFF2746 0.30 -0.7 445,953 + GFF2746 0.30 -0.1 445,953 + GFF2746 0.30 +0.8 445,953 + GFF2746 0.30 -0.8 445,953 + GFF2746 0.30 +0.3 446,050 + GFF2746 0.45 -0.5 446,051 - GFF2746 0.45 +0.3 446,051 - GFF2746 0.45 +0.7 446,071 + GFF2746 0.48 -0.4 446,071 + GFF2746 0.48 +0.3 446,071 + GFF2746 0.48 +0.2 446,167 - GFF2746 0.62 +0.2 446,167 - GFF2746 0.62 +0.5 446,318 - GFF2746 0.85 +0.1
Or see this region's nucleotide sequence