Strain Fitness in Xanthobacter sp. DMC5 around GFF2727

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2725 and GFF2726 are separated by 5 nucleotidesGFF2726 and GFF2727 are separated by 10 nucleotidesGFF2727 and GFF2728 are separated by 27 nucleotidesGFF2728 and GFF2729 are separated by 5 nucleotides GFF2725 - Vitamin B12 import ATP-binding protein BtuD, at 418,826 to 419,971 GFF2725 GFF2726 - hypothetical protein, at 419,977 to 420,837 GFF2726 GFF2727 - Inner membrane ABC transporter permease protein YdcV, at 420,848 to 421,636 GFF2727 GFF2728 - hypothetical protein, at 421,664 to 422,242 GFF2728 GFF2729 - hypothetical protein, at 422,248 to 422,832 GFF2729 Position (kb) 420 421 422Strain fitness (log2 ratio) -2 -1 0 1 2at 419.925 kb on - strandat 419.925 kb on - strandat 420.086 kb on - strand, within GFF2726at 420.086 kb on - strand, within GFF2726at 420.086 kb on - strand, within GFF2726at 420.107 kb on + strand, within GFF2726at 420.108 kb on - strand, within GFF2726at 420.136 kb on + strand, within GFF2726at 420.160 kb on + strand, within GFF2726at 420.160 kb on + strand, within GFF2726at 420.160 kb on + strand, within GFF2726at 420.160 kb on + strand, within GFF2726at 420.160 kb on + strand, within GFF2726at 420.161 kb on - strand, within GFF2726at 420.161 kb on - strand, within GFF2726at 420.161 kb on - strand, within GFF2726at 420.161 kb on - strand, within GFF2726at 420.161 kb on - strand, within GFF2726at 420.161 kb on - strand, within GFF2726at 420.161 kb on - strand, within GFF2726at 420.161 kb on - strand, within GFF2726at 420.161 kb on - strand, within GFF2726at 420.163 kb on + strand, within GFF2726at 420.163 kb on + strand, within GFF2726at 420.163 kb on + strand, within GFF2726at 420.164 kb on - strand, within GFF2726at 420.164 kb on - strand, within GFF2726at 420.232 kb on + strand, within GFF2726at 420.232 kb on + strand, within GFF2726at 420.310 kb on + strand, within GFF2726at 420.310 kb on + strand, within GFF2726at 420.310 kb on + strand, within GFF2726at 420.310 kb on + strand, within GFF2726at 420.311 kb on - strand, within GFF2726at 420.311 kb on - strand, within GFF2726at 420.344 kb on + strand, within GFF2726at 420.344 kb on + strand, within GFF2726at 420.345 kb on - strand, within GFF2726at 420.345 kb on - strand, within GFF2726at 420.345 kb on - strand, within GFF2726at 420.463 kb on + strand, within GFF2726at 420.646 kb on + strand, within GFF2726at 420.646 kb on + strand, within GFF2726at 420.646 kb on + strand, within GFF2726at 420.646 kb on + strand, within GFF2726at 420.647 kb on - strand, within GFF2726at 420.672 kb on + strand, within GFF2726at 420.706 kb on + strand, within GFF2726at 421.037 kb on + strand, within GFF2727at 421.037 kb on + strand, within GFF2727at 421.038 kb on - strand, within GFF2727at 421.038 kb on - strand, within GFF2727at 421.038 kb on - strand, within GFF2727at 421.038 kb on - strand, within GFF2727at 421.038 kb on - strand, within GFF2727at 421.038 kb on - strand, within GFF2727at 421.038 kb on - strand, within GFF2727at 421.039 kb on + strand, within GFF2727at 421.039 kb on + strand, within GFF2727at 421.039 kb on + strand, within GFF2727at 421.040 kb on - strand, within GFF2727at 421.040 kb on - strand, within GFF2727at 421.051 kb on + strand, within GFF2727at 421.235 kb on + strand, within GFF2727at 421.296 kb on - strand, within GFF2727at 421.296 kb on - strand, within GFF2727at 421.296 kb on - strand, within GFF2727at 421.296 kb on - strand, within GFF2727at 421.296 kb on - strand, within GFF2727at 421.296 kb on - strand, within GFF2727at 421.296 kb on - strand, within GFF2727at 421.538 kb on + strand, within GFF2727at 421.539 kb on - strand, within GFF2727at 421.539 kb on - strand, within GFF2727at 421.645 kb on + strandat 421.645 kb on + strandat 421.645 kb on + strandat 421.791 kb on - strand, within GFF2728at 421.970 kb on + strand, within GFF2728at 421.971 kb on - strand, within GFF2728at 422.068 kb on + strand, within GFF2728at 422.068 kb on + strand, within GFF2728at 422.068 kb on + strand, within GFF2728at 422.068 kb on + strand, within GFF2728at 422.069 kb on - strand, within GFF2728at 422.069 kb on - strand, within GFF2728at 422.069 kb on - strand, within GFF2728at 422.081 kb on + strand, within GFF2728at 422.081 kb on + strand, within GFF2728at 422.081 kb on + strand, within GFF2728at 422.081 kb on + strand, within GFF2728at 422.081 kb on + strand, within GFF2728at 422.081 kb on + strand, within GFF2728at 422.081 kb on + strand, within GFF2728at 422.082 kb on - strand, within GFF2728at 422.082 kb on - strand, within GFF2728at 422.082 kb on - strand, within GFF2728at 422.291 kb on + strandat 422.377 kb on + strand, within GFF2729at 422.377 kb on + strand, within GFF2729at 422.456 kb on + strand, within GFF2729at 422.456 kb on + strand, within GFF2729at 422.456 kb on + strand, within GFF2729at 422.457 kb on - strand, within GFF2729at 422.485 kb on + strand, within GFF2729at 422.485 kb on + strand, within GFF2729at 422.485 kb on + strand, within GFF2729at 422.486 kb on - strand, within GFF2729at 422.486 kb on - strand, within GFF2729at 422.504 kb on + strand, within GFF2729at 422.504 kb on + strand, within GFF2729at 422.550 kb on + strand, within GFF2729at 422.550 kb on + strand, within GFF2729at 422.550 kb on + strand, within GFF2729at 422.550 kb on + strand, within GFF2729at 422.551 kb on - strand, within GFF2729

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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419,925 - -0.3
419,925 - -0.7
420,086 - GFF2726 0.13 +0.2
420,086 - GFF2726 0.13 -0.4
420,086 - GFF2726 0.13 -0.5
420,107 + GFF2726 0.15 -0.1
420,108 - GFF2726 0.15 +1.0
420,136 + GFF2726 0.18 -0.7
420,160 + GFF2726 0.21 -0.3
420,160 + GFF2726 0.21 -1.2
420,160 + GFF2726 0.21 +0.8
420,160 + GFF2726 0.21 -1.1
420,160 + GFF2726 0.21 +0.3
420,161 - GFF2726 0.21 +0.3
420,161 - GFF2726 0.21 -0.3
420,161 - GFF2726 0.21 -0.5
420,161 - GFF2726 0.21 -0.3
420,161 - GFF2726 0.21 +0.7
420,161 - GFF2726 0.21 +0.0
420,161 - GFF2726 0.21 -0.8
420,161 - GFF2726 0.21 +0.5
420,161 - GFF2726 0.21 +1.1
420,163 + GFF2726 0.22 -0.8
420,163 + GFF2726 0.22 +0.5
420,163 + GFF2726 0.22 +0.2
420,164 - GFF2726 0.22 -0.7
420,164 - GFF2726 0.22 -1.0
420,232 + GFF2726 0.30 +1.5
420,232 + GFF2726 0.30 +0.3
420,310 + GFF2726 0.39 +0.2
420,310 + GFF2726 0.39 +0.2
420,310 + GFF2726 0.39 -0.6
420,310 + GFF2726 0.39 +2.2
420,311 - GFF2726 0.39 +0.2
420,311 - GFF2726 0.39 +0.5
420,344 + GFF2726 0.43 -0.6
420,344 + GFF2726 0.43 +0.1
420,345 - GFF2726 0.43 +1.1
420,345 - GFF2726 0.43 -0.3
420,345 - GFF2726 0.43 -0.3
420,463 + GFF2726 0.56 +0.6
420,646 + GFF2726 0.78 -0.0
420,646 + GFF2726 0.78 +0.2
420,646 + GFF2726 0.78 -0.2
420,646 + GFF2726 0.78 -1.8
420,647 - GFF2726 0.78 -0.1
420,672 + GFF2726 0.81 -0.2
420,706 + GFF2726 0.85 -0.2
421,037 + GFF2727 0.24 +0.3
421,037 + GFF2727 0.24 +0.5
421,038 - GFF2727 0.24 +0.0
421,038 - GFF2727 0.24 +0.1
421,038 - GFF2727 0.24 +0.2
421,038 - GFF2727 0.24 +0.4
421,038 - GFF2727 0.24 -1.3
421,038 - GFF2727 0.24 +1.3
421,038 - GFF2727 0.24 +0.3
421,039 + GFF2727 0.24 +0.7
421,039 + GFF2727 0.24 -0.3
421,039 + GFF2727 0.24 +0.2
421,040 - GFF2727 0.24 +1.0
421,040 - GFF2727 0.24 +0.7
421,051 + GFF2727 0.26 -0.2
421,235 + GFF2727 0.49 -0.4
421,296 - GFF2727 0.57 +0.9
421,296 - GFF2727 0.57 -0.6
421,296 - GFF2727 0.57 +0.3
421,296 - GFF2727 0.57 +0.6
421,296 - GFF2727 0.57 -0.1
421,296 - GFF2727 0.57 -0.3
421,296 - GFF2727 0.57 +0.2
421,538 + GFF2727 0.87 +0.3
421,539 - GFF2727 0.88 +0.3
421,539 - GFF2727 0.88 +0.3
421,645 + +0.5
421,645 + -0.8
421,645 + +0.6
421,791 - GFF2728 0.22 -0.5
421,970 + GFF2728 0.53 -0.1
421,971 - GFF2728 0.53 +0.4
422,068 + GFF2728 0.70 +0.7
422,068 + GFF2728 0.70 +0.0
422,068 + GFF2728 0.70 +0.1
422,068 + GFF2728 0.70 +0.6
422,069 - GFF2728 0.70 +0.3
422,069 - GFF2728 0.70 -0.2
422,069 - GFF2728 0.70 +0.4
422,081 + GFF2728 0.72 +0.7
422,081 + GFF2728 0.72 +0.0
422,081 + GFF2728 0.72 +0.5
422,081 + GFF2728 0.72 -0.1
422,081 + GFF2728 0.72 -0.3
422,081 + GFF2728 0.72 -0.6
422,081 + GFF2728 0.72 -0.0
422,082 - GFF2728 0.72 -0.0
422,082 - GFF2728 0.72 -0.7
422,082 - GFF2728 0.72 -0.9
422,291 + -0.3
422,377 + GFF2729 0.22 -0.1
422,377 + GFF2729 0.22 -0.2
422,456 + GFF2729 0.36 -0.3
422,456 + GFF2729 0.36 +0.6
422,456 + GFF2729 0.36 +1.3
422,457 - GFF2729 0.36 -0.5
422,485 + GFF2729 0.41 +0.5
422,485 + GFF2729 0.41 +0.5
422,485 + GFF2729 0.41 -0.1
422,486 - GFF2729 0.41 -2.2
422,486 - GFF2729 0.41 -0.4
422,504 + GFF2729 0.44 -0.6
422,504 + GFF2729 0.44 -0.3
422,550 + GFF2729 0.52 +2.1
422,550 + GFF2729 0.52 +0.2
422,550 + GFF2729 0.52 -0.1
422,550 + GFF2729 0.52 +1.1
422,551 - GFF2729 0.52 +0.2

Or see this region's nucleotide sequence