Strain Fitness in Xanthobacter sp. DMC5 around GFF2680

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2679 and GFF2680 overlap by 4 nucleotidesGFF2680 and GFF2681 overlap by 4 nucleotides GFF2679 - hypothetical protein, at 362,607 to 363,698 GFF2679 GFF2680 - hypothetical protein, at 363,695 to 364,789 GFF2680 GFF2681 - hypothetical protein, at 364,786 to 365,895 GFF2681 Position (kb) 363 364 365Strain fitness (log2 ratio) -2 -1 0 1at 362.852 kb on + strand, within GFF2679at 362.852 kb on + strand, within GFF2679at 362.852 kb on + strand, within GFF2679at 362.852 kb on + strand, within GFF2679at 362.891 kb on + strand, within GFF2679at 362.891 kb on + strand, within GFF2679at 362.956 kb on + strand, within GFF2679at 362.956 kb on + strand, within GFF2679at 362.956 kb on + strand, within GFF2679at 362.956 kb on + strand, within GFF2679at 362.956 kb on + strand, within GFF2679at 362.957 kb on - strand, within GFF2679at 362.957 kb on - strand, within GFF2679at 362.957 kb on - strand, within GFF2679at 362.997 kb on + strand, within GFF2679at 362.997 kb on + strand, within GFF2679at 362.998 kb on - strand, within GFF2679at 363.031 kb on + strand, within GFF2679at 363.124 kb on + strand, within GFF2679at 363.124 kb on + strand, within GFF2679at 363.124 kb on + strand, within GFF2679at 363.125 kb on - strand, within GFF2679at 363.125 kb on - strand, within GFF2679at 363.125 kb on - strand, within GFF2679at 363.148 kb on + strand, within GFF2679at 363.148 kb on + strand, within GFF2679at 363.156 kb on + strand, within GFF2679at 363.156 kb on + strand, within GFF2679at 363.157 kb on - strand, within GFF2679at 363.175 kb on + strand, within GFF2679at 363.176 kb on - strand, within GFF2679at 363.199 kb on + strand, within GFF2679at 363.275 kb on - strand, within GFF2679at 363.275 kb on - strand, within GFF2679at 363.311 kb on - strand, within GFF2679at 363.364 kb on + strand, within GFF2679at 363.364 kb on + strand, within GFF2679at 363.365 kb on - strand, within GFF2679at 363.365 kb on - strand, within GFF2679at 363.430 kb on + strand, within GFF2679at 363.430 kb on + strand, within GFF2679at 363.430 kb on + strand, within GFF2679at 363.430 kb on + strand, within GFF2679at 363.430 kb on + strand, within GFF2679at 363.430 kb on + strand, within GFF2679at 363.431 kb on - strand, within GFF2679at 363.431 kb on - strand, within GFF2679at 363.431 kb on - strand, within GFF2679at 363.431 kb on - strand, within GFF2679at 363.431 kb on - strand, within GFF2679at 363.431 kb on - strand, within GFF2679at 363.431 kb on - strand, within GFF2679at 363.553 kb on + strand, within GFF2679at 363.553 kb on + strand, within GFF2679at 363.604 kb on + strandat 363.605 kb on - strandat 363.605 kb on - strandat 363.605 kb on - strandat 363.605 kb on - strandat 363.771 kb on + strandat 363.771 kb on + strandat 363.771 kb on + strandat 363.772 kb on - strandat 363.772 kb on - strandat 363.772 kb on - strandat 363.772 kb on - strandat 364.068 kb on + strand, within GFF2680at 364.068 kb on + strand, within GFF2680at 364.069 kb on - strand, within GFF2680at 364.069 kb on - strand, within GFF2680at 364.069 kb on - strand, within GFF2680at 364.069 kb on - strand, within GFF2680at 364.069 kb on - strand, within GFF2680at 364.069 kb on - strand, within GFF2680at 364.290 kb on + strand, within GFF2680at 364.290 kb on + strand, within GFF2680at 364.291 kb on - strand, within GFF2680at 364.291 kb on - strand, within GFF2680at 364.291 kb on - strand, within GFF2680at 364.326 kb on + strand, within GFF2680at 364.356 kb on + strand, within GFF2680at 364.356 kb on + strand, within GFF2680at 364.357 kb on - strand, within GFF2680at 364.357 kb on - strand, within GFF2680at 364.674 kb on + strand, within GFF2680at 364.674 kb on + strand, within GFF2680at 364.674 kb on + strand, within GFF2680at 364.674 kb on + strand, within GFF2680at 364.725 kb on + strandat 364.729 kb on - strandat 364.729 kb on - strandat 364.729 kb on - strandat 364.750 kb on - strandat 364.760 kb on + strandat 364.760 kb on + strandat 364.760 kb on + strandat 364.760 kb on + strandat 364.761 kb on - strandat 364.761 kb on - strandat 364.761 kb on - strandat 364.773 kb on + strandat 364.773 kb on + strandat 364.773 kb on + strandat 364.773 kb on + strandat 364.774 kb on - strandat 364.844 kb on + strandat 364.844 kb on + strandat 364.845 kb on - strandat 364.845 kb on - strandat 364.845 kb on - strandat 364.979 kb on + strand, within GFF2681at 364.979 kb on + strand, within GFF2681at 364.979 kb on + strand, within GFF2681at 364.979 kb on + strand, within GFF2681at 364.979 kb on + strand, within GFF2681at 364.980 kb on - strand, within GFF2681at 364.980 kb on - strand, within GFF2681at 364.980 kb on - strand, within GFF2681at 364.980 kb on - strand, within GFF2681at 364.980 kb on - strand, within GFF2681at 365.099 kb on + strand, within GFF2681at 365.100 kb on - strand, within GFF2681at 365.100 kb on - strand, within GFF2681at 365.100 kb on - strand, within GFF2681at 365.103 kb on - strand, within GFF2681at 365.180 kb on + strand, within GFF2681at 365.192 kb on + strand, within GFF2681at 365.192 kb on + strand, within GFF2681at 365.237 kb on + strand, within GFF2681at 365.237 kb on + strand, within GFF2681at 365.237 kb on + strand, within GFF2681at 365.237 kb on + strand, within GFF2681at 365.237 kb on + strand, within GFF2681at 365.237 kb on + strand, within GFF2681at 365.237 kb on + strand, within GFF2681at 365.237 kb on + strand, within GFF2681at 365.237 kb on + strand, within GFF2681at 365.237 kb on + strand, within GFF2681at 365.238 kb on - strand, within GFF2681at 365.238 kb on - strand, within GFF2681at 365.238 kb on - strand, within GFF2681at 365.238 kb on - strand, within GFF2681at 365.238 kb on - strand, within GFF2681at 365.282 kb on + strand, within GFF2681at 365.282 kb on + strand, within GFF2681at 365.282 kb on + strand, within GFF2681at 365.283 kb on - strand, within GFF2681at 365.283 kb on - strand, within GFF2681at 365.283 kb on - strand, within GFF2681at 365.283 kb on - strand, within GFF2681at 365.283 kb on - strand, within GFF2681at 365.283 kb on - strand, within GFF2681at 365.283 kb on - strand, within GFF2681at 365.283 kb on - strand, within GFF2681at 365.435 kb on + strand, within GFF2681at 365.435 kb on + strand, within GFF2681at 365.435 kb on + strand, within GFF2681at 365.436 kb on - strand, within GFF2681at 365.436 kb on - strand, within GFF2681at 365.436 kb on - strand, within GFF2681at 365.477 kb on + strand, within GFF2681at 365.478 kb on - strand, within GFF2681at 365.536 kb on - strand, within GFF2681at 365.699 kb on + strand, within GFF2681at 365.703 kb on - strand, within GFF2681

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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362,852 + GFF2679 0.22 +0.5
362,852 + GFF2679 0.22 +0.5
362,852 + GFF2679 0.22 -0.4
362,852 + GFF2679 0.22 -0.4
362,891 + GFF2679 0.26 +0.0
362,891 + GFF2679 0.26 -0.4
362,956 + GFF2679 0.32 -0.8
362,956 + GFF2679 0.32 +0.3
362,956 + GFF2679 0.32 +0.2
362,956 + GFF2679 0.32 -0.6
362,956 + GFF2679 0.32 +0.2
362,957 - GFF2679 0.32 +0.7
362,957 - GFF2679 0.32 +0.3
362,957 - GFF2679 0.32 -0.5
362,997 + GFF2679 0.36 -0.8
362,997 + GFF2679 0.36 -0.5
362,998 - GFF2679 0.36 +1.2
363,031 + GFF2679 0.39 -0.8
363,124 + GFF2679 0.47 +0.5
363,124 + GFF2679 0.47 -0.1
363,124 + GFF2679 0.47 +0.8
363,125 - GFF2679 0.47 +1.1
363,125 - GFF2679 0.47 +0.2
363,125 - GFF2679 0.47 -0.3
363,148 + GFF2679 0.50 -1.7
363,148 + GFF2679 0.50 +0.2
363,156 + GFF2679 0.50 +0.8
363,156 + GFF2679 0.50 -0.2
363,157 - GFF2679 0.50 -2.1
363,175 + GFF2679 0.52 -0.3
363,176 - GFF2679 0.52 +0.2
363,199 + GFF2679 0.54 -0.3
363,275 - GFF2679 0.61 -1.4
363,275 - GFF2679 0.61 -0.3
363,311 - GFF2679 0.64 -1.0
363,364 + GFF2679 0.69 +0.6
363,364 + GFF2679 0.69 -0.5
363,365 - GFF2679 0.69 -0.4
363,365 - GFF2679 0.69 -0.8
363,430 + GFF2679 0.75 +0.3
363,430 + GFF2679 0.75 +0.5
363,430 + GFF2679 0.75 +1.0
363,430 + GFF2679 0.75 +0.1
363,430 + GFF2679 0.75 +0.4
363,430 + GFF2679 0.75 -0.3
363,431 - GFF2679 0.75 +0.6
363,431 - GFF2679 0.75 -0.4
363,431 - GFF2679 0.75 -0.3
363,431 - GFF2679 0.75 +0.7
363,431 - GFF2679 0.75 +1.2
363,431 - GFF2679 0.75 -0.3
363,431 - GFF2679 0.75 -0.2
363,553 + GFF2679 0.87 -1.3
363,553 + GFF2679 0.87 +0.7
363,604 + -0.0
363,605 - -0.4
363,605 - +0.9
363,605 - -0.6
363,605 - -0.6
363,771 + -0.2
363,771 + -0.7
363,771 + -0.0
363,772 - +0.0
363,772 - +0.8
363,772 - -0.3
363,772 - -0.0
364,068 + GFF2680 0.34 -0.0
364,068 + GFF2680 0.34 -0.1
364,069 - GFF2680 0.34 -0.5
364,069 - GFF2680 0.34 -0.2
364,069 - GFF2680 0.34 -0.0
364,069 - GFF2680 0.34 -0.3
364,069 - GFF2680 0.34 -0.6
364,069 - GFF2680 0.34 -1.5
364,290 + GFF2680 0.54 -0.8
364,290 + GFF2680 0.54 -0.0
364,291 - GFF2680 0.54 -0.6
364,291 - GFF2680 0.54 -0.1
364,291 - GFF2680 0.54 -0.1
364,326 + GFF2680 0.58 -0.5
364,356 + GFF2680 0.60 -0.2
364,356 + GFF2680 0.60 -0.5
364,357 - GFF2680 0.60 -0.8
364,357 - GFF2680 0.60 -0.3
364,674 + GFF2680 0.89 -0.6
364,674 + GFF2680 0.89 +0.0
364,674 + GFF2680 0.89 -0.5
364,674 + GFF2680 0.89 +0.3
364,725 + -1.3
364,729 - +0.4
364,729 - +0.3
364,729 - -0.8
364,750 - -0.5
364,760 + +0.6
364,760 + +0.3
364,760 + +0.4
364,760 + +0.1
364,761 - -1.0
364,761 - -0.0
364,761 - +0.2
364,773 + +0.1
364,773 + +0.9
364,773 + -0.7
364,773 + +0.3
364,774 - -0.8
364,844 + -0.4
364,844 + -1.1
364,845 - -0.4
364,845 - -0.9
364,845 - +0.0
364,979 + GFF2681 0.17 +0.2
364,979 + GFF2681 0.17 -0.3
364,979 + GFF2681 0.17 +0.2
364,979 + GFF2681 0.17 +0.2
364,979 + GFF2681 0.17 +0.2
364,980 - GFF2681 0.17 -0.5
364,980 - GFF2681 0.17 -0.5
364,980 - GFF2681 0.17 +0.8
364,980 - GFF2681 0.17 +0.6
364,980 - GFF2681 0.17 +0.5
365,099 + GFF2681 0.28 +0.5
365,100 - GFF2681 0.28 +0.1
365,100 - GFF2681 0.28 -0.4
365,100 - GFF2681 0.28 +0.6
365,103 - GFF2681 0.29 +0.7
365,180 + GFF2681 0.35 +0.6
365,192 + GFF2681 0.37 -0.1
365,192 + GFF2681 0.37 +0.2
365,237 + GFF2681 0.41 -0.7
365,237 + GFF2681 0.41 -0.3
365,237 + GFF2681 0.41 +0.6
365,237 + GFF2681 0.41 +0.5
365,237 + GFF2681 0.41 -0.8
365,237 + GFF2681 0.41 -0.8
365,237 + GFF2681 0.41 -0.1
365,237 + GFF2681 0.41 -1.4
365,237 + GFF2681 0.41 -0.2
365,237 + GFF2681 0.41 +0.3
365,238 - GFF2681 0.41 -1.1
365,238 - GFF2681 0.41 -0.2
365,238 - GFF2681 0.41 -0.1
365,238 - GFF2681 0.41 +0.8
365,238 - GFF2681 0.41 +0.6
365,282 + GFF2681 0.45 -0.5
365,282 + GFF2681 0.45 -0.2
365,282 + GFF2681 0.45 -0.4
365,283 - GFF2681 0.45 -0.2
365,283 - GFF2681 0.45 -0.2
365,283 - GFF2681 0.45 -0.7
365,283 - GFF2681 0.45 +0.1
365,283 - GFF2681 0.45 -0.5
365,283 - GFF2681 0.45 -1.4
365,283 - GFF2681 0.45 -0.4
365,283 - GFF2681 0.45 +0.2
365,435 + GFF2681 0.58 +0.0
365,435 + GFF2681 0.58 -0.4
365,435 + GFF2681 0.58 -0.1
365,436 - GFF2681 0.59 +0.9
365,436 - GFF2681 0.59 -0.5
365,436 - GFF2681 0.59 +0.2
365,477 + GFF2681 0.62 +0.8
365,478 - GFF2681 0.62 +0.7
365,536 - GFF2681 0.68 -0.2
365,699 + GFF2681 0.82 +0.2
365,703 - GFF2681 0.83 -0.6

Or see this region's nucleotide sequence