Strain Fitness in Xanthobacter sp. DMC5 around GFF2670

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2669 and GFF2670 are separated by 233 nucleotidesGFF2670 and GFF2671 are separated by 23 nucleotides GFF2669 - NADH dehydrogenase-like protein, at 353,911 to 355,206 GFF2669 GFF2670 - Protein YciE, at 355,440 to 355,949 GFF2670 GFF2671 - putative manganese catalase, at 355,973 to 356,851 GFF2671 Position (kb) 355 356Strain fitness (log2 ratio) -2 -1 0 1at 354.571 kb on + strand, within GFF2669at 354.571 kb on + strand, within GFF2669at 354.572 kb on - strand, within GFF2669at 354.731 kb on + strand, within GFF2669at 354.732 kb on - strand, within GFF2669at 354.735 kb on + strand, within GFF2669at 354.735 kb on + strand, within GFF2669at 354.736 kb on - strand, within GFF2669at 354.736 kb on - strand, within GFF2669at 354.819 kb on + strand, within GFF2669at 354.889 kb on + strand, within GFF2669at 354.889 kb on + strand, within GFF2669at 354.890 kb on - strand, within GFF2669at 354.890 kb on - strand, within GFF2669at 354.890 kb on - strand, within GFF2669at 355.001 kb on - strand, within GFF2669at 355.063 kb on + strand, within GFF2669at 355.063 kb on + strand, within GFF2669at 355.064 kb on - strand, within GFF2669at 355.121 kb on - strandat 355.121 kb on - strandat 355.121 kb on - strandat 355.121 kb on - strandat 355.121 kb on - strandat 355.166 kb on + strandat 355.315 kb on - strandat 355.335 kb on - strandat 355.335 kb on - strandat 355.338 kb on - strandat 355.339 kb on + strandat 355.360 kb on + strandat 355.445 kb on + strandat 355.445 kb on + strandat 355.445 kb on + strandat 355.446 kb on - strandat 355.548 kb on + strand, within GFF2670at 355.603 kb on + strand, within GFF2670at 355.603 kb on + strand, within GFF2670at 355.604 kb on - strand, within GFF2670at 355.604 kb on - strand, within GFF2670at 355.604 kb on - strand, within GFF2670at 355.604 kb on - strand, within GFF2670at 355.604 kb on - strand, within GFF2670at 355.604 kb on - strand, within GFF2670at 355.746 kb on + strand, within GFF2670at 355.746 kb on + strand, within GFF2670at 355.746 kb on + strand, within GFF2670at 355.747 kb on - strand, within GFF2670at 355.747 kb on - strand, within GFF2670at 355.747 kb on - strand, within GFF2670at 355.761 kb on + strand, within GFF2670at 355.777 kb on - strand, within GFF2670at 355.908 kb on + strandat 355.908 kb on + strandat 355.908 kb on + strandat 355.909 kb on - strandat 355.909 kb on - strandat 355.909 kb on - strandat 356.000 kb on + strandat 356.001 kb on - strandat 356.001 kb on - strandat 356.001 kb on - strandat 356.001 kb on - strandat 356.001 kb on - strandat 356.001 kb on - strandat 356.096 kb on + strand, within GFF2671at 356.096 kb on + strand, within GFF2671at 356.096 kb on + strand, within GFF2671at 356.096 kb on + strand, within GFF2671at 356.097 kb on - strand, within GFF2671at 356.097 kb on - strand, within GFF2671at 356.097 kb on - strand, within GFF2671at 356.097 kb on - strand, within GFF2671at 356.135 kb on + strand, within GFF2671at 356.135 kb on + strand, within GFF2671at 356.135 kb on + strand, within GFF2671at 356.136 kb on - strand, within GFF2671at 356.136 kb on - strand, within GFF2671at 356.393 kb on + strand, within GFF2671at 356.393 kb on + strand, within GFF2671at 356.393 kb on + strand, within GFF2671at 356.393 kb on + strand, within GFF2671at 356.393 kb on + strand, within GFF2671at 356.393 kb on + strand, within GFF2671at 356.394 kb on - strand, within GFF2671at 356.394 kb on - strand, within GFF2671at 356.394 kb on - strand, within GFF2671at 356.394 kb on - strand, within GFF2671at 356.394 kb on - strand, within GFF2671at 356.394 kb on - strand, within GFF2671at 356.394 kb on - strand, within GFF2671at 356.481 kb on - strand, within GFF2671at 356.481 kb on - strand, within GFF2671at 356.481 kb on - strand, within GFF2671at 356.516 kb on - strand, within GFF2671at 356.654 kb on + strand, within GFF2671at 356.654 kb on + strand, within GFF2671at 356.655 kb on - strand, within GFF2671at 356.655 kb on - strand, within GFF2671at 356.660 kb on + strand, within GFF2671at 356.660 kb on + strand, within GFF2671at 356.661 kb on - strand, within GFF2671at 356.661 kb on - strand, within GFF2671at 356.661 kb on - strand, within GFF2671at 356.662 kb on + strand, within GFF2671at 356.662 kb on + strand, within GFF2671at 356.663 kb on - strand, within GFF2671at 356.663 kb on - strand, within GFF2671at 356.663 kb on - strand, within GFF2671at 356.663 kb on - strand, within GFF2671at 356.665 kb on - strand, within GFF2671at 356.744 kb on + strand, within GFF2671at 356.744 kb on + strand, within GFF2671at 356.807 kb on + strandat 356.807 kb on + strandat 356.807 kb on + strandat 356.808 kb on - strandat 356.808 kb on - strandat 356.874 kb on + strandat 356.874 kb on + strandat 356.874 kb on + strandat 356.875 kb on - strandat 356.875 kb on - strandat 356.875 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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354,571 + GFF2669 0.51 +0.6
354,571 + GFF2669 0.51 +0.2
354,572 - GFF2669 0.51 -1.6
354,731 + GFF2669 0.63 +0.5
354,732 - GFF2669 0.63 +0.3
354,735 + GFF2669 0.64 +0.4
354,735 + GFF2669 0.64 +0.3
354,736 - GFF2669 0.64 +0.3
354,736 - GFF2669 0.64 +0.4
354,819 + GFF2669 0.70 -1.0
354,889 + GFF2669 0.75 -0.2
354,889 + GFF2669 0.75 +0.5
354,890 - GFF2669 0.76 +0.1
354,890 - GFF2669 0.76 -1.3
354,890 - GFF2669 0.76 -0.5
355,001 - GFF2669 0.84 +0.3
355,063 + GFF2669 0.89 -0.1
355,063 + GFF2669 0.89 +0.3
355,064 - GFF2669 0.89 +0.9
355,121 - +0.1
355,121 - +0.9
355,121 - -0.7
355,121 - +0.2
355,121 - -0.2
355,166 + -0.3
355,315 - -0.4
355,335 - +0.2
355,335 - +0.5
355,338 - +1.1
355,339 + +0.3
355,360 + -0.4
355,445 + -0.5
355,445 + +0.2
355,445 + -0.1
355,446 - -0.0
355,548 + GFF2670 0.21 -0.5
355,603 + GFF2670 0.32 +1.1
355,603 + GFF2670 0.32 -0.2
355,604 - GFF2670 0.32 -0.1
355,604 - GFF2670 0.32 -2.1
355,604 - GFF2670 0.32 +0.0
355,604 - GFF2670 0.32 -0.6
355,604 - GFF2670 0.32 -0.2
355,604 - GFF2670 0.32 -0.4
355,746 + GFF2670 0.60 -0.1
355,746 + GFF2670 0.60 -0.9
355,746 + GFF2670 0.60 +0.4
355,747 - GFF2670 0.60 +0.3
355,747 - GFF2670 0.60 +0.2
355,747 - GFF2670 0.60 -0.8
355,761 + GFF2670 0.63 +0.2
355,777 - GFF2670 0.66 -0.3
355,908 + -0.1
355,908 + -0.5
355,908 + -0.0
355,909 - +0.2
355,909 - -2.6
355,909 - +0.4
356,000 + -2.0
356,001 - -0.7
356,001 - +0.9
356,001 - -0.4
356,001 - -0.6
356,001 - -0.7
356,001 - -0.2
356,096 + GFF2671 0.14 +0.9
356,096 + GFF2671 0.14 +1.0
356,096 + GFF2671 0.14 -0.5
356,096 + GFF2671 0.14 +1.0
356,097 - GFF2671 0.14 +0.1
356,097 - GFF2671 0.14 +0.2
356,097 - GFF2671 0.14 -0.5
356,097 - GFF2671 0.14 -0.1
356,135 + GFF2671 0.18 +0.3
356,135 + GFF2671 0.18 +0.3
356,135 + GFF2671 0.18 +0.2
356,136 - GFF2671 0.19 +0.3
356,136 - GFF2671 0.19 +0.1
356,393 + GFF2671 0.48 -0.3
356,393 + GFF2671 0.48 +0.2
356,393 + GFF2671 0.48 +0.2
356,393 + GFF2671 0.48 -0.4
356,393 + GFF2671 0.48 -0.8
356,393 + GFF2671 0.48 -0.2
356,394 - GFF2671 0.48 -0.3
356,394 - GFF2671 0.48 -0.9
356,394 - GFF2671 0.48 -0.2
356,394 - GFF2671 0.48 +0.1
356,394 - GFF2671 0.48 +0.5
356,394 - GFF2671 0.48 -0.0
356,394 - GFF2671 0.48 -0.1
356,481 - GFF2671 0.58 -0.7
356,481 - GFF2671 0.58 +0.3
356,481 - GFF2671 0.58 -0.9
356,516 - GFF2671 0.62 -0.7
356,654 + GFF2671 0.77 +0.2
356,654 + GFF2671 0.77 -0.2
356,655 - GFF2671 0.78 +0.1
356,655 - GFF2671 0.78 +0.8
356,660 + GFF2671 0.78 -1.3
356,660 + GFF2671 0.78 -0.2
356,661 - GFF2671 0.78 -0.2
356,661 - GFF2671 0.78 -0.4
356,661 - GFF2671 0.78 +0.6
356,662 + GFF2671 0.78 +0.4
356,662 + GFF2671 0.78 -0.7
356,663 - GFF2671 0.78 -0.2
356,663 - GFF2671 0.78 +0.2
356,663 - GFF2671 0.78 -0.5
356,663 - GFF2671 0.78 -0.0
356,665 - GFF2671 0.79 -0.5
356,744 + GFF2671 0.88 -0.0
356,744 + GFF2671 0.88 -0.2
356,807 + -0.9
356,807 + +0.1
356,807 + -0.3
356,808 - -0.3
356,808 - -0.1
356,874 + -0.2
356,874 + -0.2
356,874 + +0.0
356,875 - -1.3
356,875 - -1.0
356,875 - -0.3

Or see this region's nucleotide sequence