Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2656 and GFF2657 overlap by 4 nucleotides GFF2657 and GFF2658 overlap by 8 nucleotides GFF2658 and GFF2659 are separated by 96 nucleotides GFF2659 and GFF2660 are separated by 18 nucleotides GFF2660 and GFF2661 are separated by 22 nucleotides GFF2661 and GFF2662 are separated by 217 nucleotides
GFF2656 - hypothetical protein, at 344,120 to 344,443
GFF2656
GFF2657 - hypothetical protein, at 344,440 to 345,270
GFF2657
GFF2658 - hypothetical protein, at 345,263 to 345,697
GFF2658
GFF2659 - hypothetical protein, at 345,794 to 345,973
GFF2659
GFF2660 - hypothetical protein, at 345,992 to 346,204
GFF2660
GFF2661 - hypothetical protein, at 346,227 to 346,451
GFF2661
GFF2662 - hypothetical protein, at 346,669 to 347,958
GFF2662
Position (kb) 345
346 Strain fitness (log2 ratio) -2
-1
0
1
2 at 344.397 kb on + strand, within GFF2656 at 344.397 kb on + strand, within GFF2656 at 344.398 kb on - strand, within GFF2656 at 344.398 kb on - strand, within GFF2656 at 344.398 kb on - strand, within GFF2656 at 344.423 kb on + strand at 344.475 kb on + strand at 344.475 kb on + strand at 344.475 kb on + strand at 344.475 kb on + strand at 344.475 kb on + strand at 344.475 kb on + strand at 344.476 kb on - strand at 344.476 kb on - strand at 344.476 kb on - strand at 344.545 kb on + strand, within GFF2657 at 344.545 kb on + strand, within GFF2657 at 344.545 kb on + strand, within GFF2657 at 344.545 kb on + strand, within GFF2657 at 344.545 kb on + strand, within GFF2657 at 344.545 kb on + strand, within GFF2657 at 344.545 kb on + strand, within GFF2657 at 344.546 kb on - strand, within GFF2657 at 344.546 kb on - strand, within GFF2657 at 344.546 kb on - strand, within GFF2657 at 344.546 kb on - strand, within GFF2657 at 344.546 kb on - strand, within GFF2657 at 344.546 kb on - strand, within GFF2657 at 344.546 kb on - strand, within GFF2657 at 344.546 kb on - strand, within GFF2657 at 344.609 kb on + strand, within GFF2657 at 344.609 kb on + strand, within GFF2657 at 344.609 kb on + strand, within GFF2657 at 344.610 kb on - strand, within GFF2657 at 344.610 kb on - strand, within GFF2657 at 344.610 kb on - strand, within GFF2657 at 344.610 kb on - strand, within GFF2657 at 344.610 kb on - strand, within GFF2657 at 344.610 kb on - strand, within GFF2657 at 344.657 kb on + strand, within GFF2657 at 344.657 kb on + strand, within GFF2657 at 344.657 kb on + strand, within GFF2657 at 344.657 kb on + strand, within GFF2657 at 344.657 kb on + strand, within GFF2657 at 344.657 kb on + strand, within GFF2657 at 344.658 kb on - strand, within GFF2657 at 344.658 kb on - strand, within GFF2657 at 344.786 kb on + strand, within GFF2657 at 344.786 kb on + strand, within GFF2657 at 344.787 kb on - strand, within GFF2657 at 344.787 kb on - strand, within GFF2657 at 344.828 kb on + strand, within GFF2657 at 344.828 kb on + strand, within GFF2657 at 344.868 kb on - strand, within GFF2657 at 345.026 kb on + strand, within GFF2657 at 345.026 kb on + strand, within GFF2657 at 345.106 kb on + strand, within GFF2657 at 345.205 kb on + strand at 345.205 kb on + strand at 345.205 kb on + strand at 345.205 kb on + strand at 345.205 kb on + strand at 345.205 kb on + strand at 345.205 kb on + strand at 345.205 kb on + strand at 345.205 kb on + strand at 345.205 kb on + strand at 345.205 kb on + strand at 345.205 kb on + strand at 345.205 kb on + strand at 345.206 kb on - strand at 345.206 kb on - strand at 345.206 kb on - strand at 345.206 kb on - strand at 345.206 kb on - strand at 345.206 kb on - strand at 345.206 kb on - strand at 345.206 kb on - strand at 345.206 kb on - strand at 345.206 kb on - strand at 345.206 kb on - strand at 345.206 kb on - strand at 345.316 kb on - strand, within GFF2658 at 345.316 kb on - strand, within GFF2658 at 345.667 kb on + strand at 345.667 kb on + strand at 345.667 kb on + strand at 345.668 kb on - strand at 345.668 kb on - strand at 345.668 kb on - strand at 345.674 kb on + strand at 345.674 kb on + strand at 345.674 kb on + strand at 345.674 kb on + strand at 345.674 kb on + strand at 345.674 kb on + strand at 345.675 kb on - strand at 345.675 kb on - strand at 345.719 kb on + strand at 345.719 kb on + strand at 345.719 kb on + strand at 345.719 kb on + strand at 345.720 kb on - strand at 345.871 kb on + strand, within GFF2659 at 345.872 kb on - strand, within GFF2659 at 345.952 kb on - strand, within GFF2659 at 345.956 kb on + strand at 345.956 kb on + strand at 345.956 kb on + strand at 345.957 kb on - strand at 345.972 kb on - strand at 345.972 kb on - strand at 345.972 kb on - strand at 346.069 kb on + strand, within GFF2660 at 346.070 kb on - strand, within GFF2660 at 346.072 kb on + strand, within GFF2660 at 346.072 kb on + strand, within GFF2660 at 346.072 kb on + strand, within GFF2660 at 346.072 kb on + strand, within GFF2660 at 346.072 kb on + strand, within GFF2660 at 346.072 kb on + strand, within GFF2660 at 346.073 kb on - strand, within GFF2660 at 346.073 kb on - strand, within GFF2660 at 346.073 kb on - strand, within GFF2660 at 346.073 kb on - strand, within GFF2660 at 346.073 kb on - strand, within GFF2660 at 346.073 kb on - strand, within GFF2660 at 346.149 kb on - strand, within GFF2660 at 346.149 kb on - strand, within GFF2660 at 346.149 kb on - strand, within GFF2660 at 346.225 kb on + strand at 346.225 kb on + strand at 346.225 kb on + strand at 346.225 kb on + strand at 346.225 kb on + strand at 346.225 kb on + strand at 346.226 kb on - strand at 346.226 kb on - strand at 346.226 kb on - strand at 346.226 kb on - strand at 346.297 kb on + strand, within GFF2661 at 346.297 kb on + strand, within GFF2661 at 346.297 kb on + strand, within GFF2661 at 346.297 kb on + strand, within GFF2661 at 346.298 kb on - strand, within GFF2661 at 346.298 kb on - strand, within GFF2661 at 346.298 kb on - strand, within GFF2661 at 346.298 kb on - strand, within GFF2661 at 346.298 kb on - strand, within GFF2661 at 346.391 kb on + strand, within GFF2661 at 346.392 kb on - strand, within GFF2661 at 346.392 kb on - strand, within GFF2661 at 346.427 kb on + strand, within GFF2661 at 346.428 kb on - strand, within GFF2661 at 346.464 kb on + strand at 346.464 kb on + strand at 346.464 kb on + strand at 346.465 kb on - strand at 346.465 kb on - strand at 346.465 kb on - strand at 346.508 kb on + strand at 346.508 kb on + strand at 346.544 kb on + strand at 346.544 kb on + strand at 346.544 kb on + strand at 346.544 kb on + strand at 346.545 kb on - strand at 346.545 kb on - strand at 346.545 kb on - strand at 346.545 kb on - strand at 346.644 kb on + strand at 346.644 kb on + strand at 346.644 kb on + strand at 346.644 kb on + strand at 346.644 kb on + strand at 346.645 kb on - strand at 346.645 kb on - strand at 346.645 kb on - strand at 346.645 kb on - strand at 346.645 kb on - strand at 346.645 kb on - strand at 346.657 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 344,397 + GFF2656 0.85 -1.4 344,397 + GFF2656 0.85 -0.2 344,398 - GFF2656 0.86 -0.1 344,398 - GFF2656 0.86 -0.2 344,398 - GFF2656 0.86 +0.7 344,423 + -0.5 344,475 + -0.2 344,475 + -0.3 344,475 + -1.6 344,475 + -1.8 344,475 + +1.0 344,475 + -0.1 344,476 - -0.2 344,476 - -0.8 344,476 - -0.3 344,545 + GFF2657 0.13 -0.1 344,545 + GFF2657 0.13 +1.4 344,545 + GFF2657 0.13 -0.7 344,545 + GFF2657 0.13 +1.0 344,545 + GFF2657 0.13 -0.5 344,545 + GFF2657 0.13 +0.4 344,545 + GFF2657 0.13 +0.2 344,546 - GFF2657 0.13 +0.7 344,546 - GFF2657 0.13 +0.5 344,546 - GFF2657 0.13 -0.0 344,546 - GFF2657 0.13 +0.5 344,546 - GFF2657 0.13 -0.4 344,546 - GFF2657 0.13 -0.8 344,546 - GFF2657 0.13 -1.3 344,546 - GFF2657 0.13 -0.2 344,609 + GFF2657 0.20 +0.3 344,609 + GFF2657 0.20 -1.3 344,609 + GFF2657 0.20 +0.1 344,610 - GFF2657 0.20 +0.6 344,610 - GFF2657 0.20 +0.3 344,610 - GFF2657 0.20 -0.8 344,610 - GFF2657 0.20 +0.3 344,610 - GFF2657 0.20 -0.5 344,610 - GFF2657 0.20 -1.5 344,657 + GFF2657 0.26 +0.0 344,657 + GFF2657 0.26 +0.4 344,657 + GFF2657 0.26 +0.9 344,657 + GFF2657 0.26 +0.2 344,657 + GFF2657 0.26 +1.0 344,657 + GFF2657 0.26 -0.3 344,658 - GFF2657 0.26 +0.9 344,658 - GFF2657 0.26 +0.2 344,786 + GFF2657 0.42 +0.1 344,786 + GFF2657 0.42 +0.1 344,787 - GFF2657 0.42 +0.6 344,787 - GFF2657 0.42 +0.1 344,828 + GFF2657 0.47 -0.3 344,828 + GFF2657 0.47 +2.0 344,868 - GFF2657 0.52 +0.0 345,026 + GFF2657 0.71 +0.3 345,026 + GFF2657 0.71 -0.6 345,106 + GFF2657 0.80 -0.6 345,205 + +1.3 345,205 + +0.7 345,205 + -0.3 345,205 + -0.2 345,205 + -0.3 345,205 + -0.2 345,205 + -0.0 345,205 + -0.7 345,205 + +0.7 345,205 + +0.4 345,205 + -0.8 345,205 + +0.2 345,205 + +0.5 345,206 - -0.2 345,206 - -0.5 345,206 - -1.0 345,206 - +0.3 345,206 - -0.0 345,206 - -0.4 345,206 - +0.1 345,206 - -0.0 345,206 - -0.2 345,206 - +0.2 345,206 - +0.4 345,206 - -0.0 345,316 - GFF2658 0.12 +1.3 345,316 - GFF2658 0.12 -0.6 345,667 + -0.9 345,667 + -0.4 345,667 + -2.3 345,668 - -0.1 345,668 - -0.2 345,668 - -0.0 345,674 + -0.4 345,674 + +0.3 345,674 + -1.1 345,674 + -0.4 345,674 + +0.7 345,674 + -0.5 345,675 - -0.2 345,675 - -0.1 345,719 + +0.1 345,719 + +0.2 345,719 + +0.4 345,719 + -0.8 345,720 - +0.5 345,871 + GFF2659 0.43 +0.0 345,872 - GFF2659 0.43 +0.8 345,952 - GFF2659 0.88 +0.3 345,956 + +0.1 345,956 + -1.0 345,956 + -0.1 345,957 - +0.7 345,972 - -0.3 345,972 - -1.1 345,972 - -1.4 346,069 + GFF2660 0.36 +0.1 346,070 - GFF2660 0.37 +0.1 346,072 + GFF2660 0.38 +0.3 346,072 + GFF2660 0.38 +0.3 346,072 + GFF2660 0.38 -0.5 346,072 + GFF2660 0.38 -0.3 346,072 + GFF2660 0.38 -0.3 346,072 + GFF2660 0.38 +1.5 346,073 - GFF2660 0.38 -0.9 346,073 - GFF2660 0.38 +0.5 346,073 - GFF2660 0.38 -0.1 346,073 - GFF2660 0.38 +0.3 346,073 - GFF2660 0.38 +0.7 346,073 - GFF2660 0.38 -0.3 346,149 - GFF2660 0.74 -0.2 346,149 - GFF2660 0.74 +0.6 346,149 - GFF2660 0.74 -0.5 346,225 + -0.1 346,225 + -0.4 346,225 + -0.0 346,225 + -0.2 346,225 + +0.1 346,225 + -0.9 346,226 - +0.2 346,226 - +1.0 346,226 - -0.8 346,226 - -0.7 346,297 + GFF2661 0.31 +1.2 346,297 + GFF2661 0.31 -0.3 346,297 + GFF2661 0.31 +0.3 346,297 + GFF2661 0.31 +0.7 346,298 - GFF2661 0.32 -0.1 346,298 - GFF2661 0.32 +0.4 346,298 - GFF2661 0.32 +0.7 346,298 - GFF2661 0.32 +0.6 346,298 - GFF2661 0.32 -0.1 346,391 + GFF2661 0.73 -0.7 346,392 - GFF2661 0.73 +1.0 346,392 - GFF2661 0.73 +0.8 346,427 + GFF2661 0.89 -0.3 346,428 - GFF2661 0.89 +0.1 346,464 + -0.5 346,464 + -0.7 346,464 + +0.2 346,465 - -0.3 346,465 - +0.5 346,465 - +0.6 346,508 + +0.4 346,508 + +1.0 346,544 + +0.2 346,544 + +0.4 346,544 + +0.3 346,544 + +0.7 346,545 - -0.2 346,545 - +0.3 346,545 - -0.3 346,545 - -0.8 346,644 + -0.3 346,644 + +0.3 346,644 + -0.2 346,644 + -0.3 346,644 + -0.9 346,645 - -0.5 346,645 - +0.1 346,645 - -0.5 346,645 - +0.2 346,645 - +0.3 346,645 - -0.2 346,657 + -0.2
Or see this region's nucleotide sequence