Strain Fitness in Xanthobacter sp. DMC5 around GFF2648

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2647 and GFF2648 are separated by 87 nucleotidesGFF2648 and GFF2649 are separated by 764 nucleotides GFF2647 - HTH-type transcriptional regulator DmlR, at 332,628 to 333,533 GFF2647 GFF2648 - Pyridoxal 4-dehydrogenase, at 333,621 to 334,634 GFF2648 GFF2649 - hypothetical protein, at 335,399 to 335,941 GFF2649 Position (kb) 333 334 335Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 332.762 kb on - strand, within GFF2647at 332.823 kb on + strand, within GFF2647at 332.826 kb on + strand, within GFF2647at 332.827 kb on - strand, within GFF2647at 332.982 kb on + strand, within GFF2647at 332.989 kb on - strand, within GFF2647at 333.005 kb on - strand, within GFF2647at 333.033 kb on + strand, within GFF2647at 333.033 kb on + strand, within GFF2647at 333.065 kb on - strand, within GFF2647at 333.141 kb on + strand, within GFF2647at 333.141 kb on + strand, within GFF2647at 333.302 kb on + strand, within GFF2647at 333.302 kb on + strand, within GFF2647at 333.302 kb on + strand, within GFF2647at 333.354 kb on + strand, within GFF2647at 333.354 kb on + strand, within GFF2647at 333.355 kb on - strand, within GFF2647at 333.564 kb on + strandat 333.621 kb on + strandat 333.886 kb on + strand, within GFF2648at 333.887 kb on - strand, within GFF2648at 333.887 kb on - strand, within GFF2648at 333.887 kb on - strand, within GFF2648at 333.925 kb on + strand, within GFF2648at 333.925 kb on + strand, within GFF2648at 333.926 kb on - strand, within GFF2648at 333.944 kb on + strand, within GFF2648at 334.012 kb on + strand, within GFF2648at 334.013 kb on - strand, within GFF2648at 334.157 kb on + strand, within GFF2648at 334.157 kb on + strand, within GFF2648at 334.157 kb on + strand, within GFF2648at 334.157 kb on + strand, within GFF2648at 334.195 kb on + strand, within GFF2648at 334.195 kb on + strand, within GFF2648at 334.195 kb on + strand, within GFF2648at 334.195 kb on + strand, within GFF2648at 334.195 kb on + strand, within GFF2648at 334.195 kb on + strand, within GFF2648at 334.196 kb on - strand, within GFF2648at 334.196 kb on - strand, within GFF2648at 334.196 kb on - strand, within GFF2648at 334.279 kb on + strand, within GFF2648at 334.280 kb on - strand, within GFF2648at 334.280 kb on - strand, within GFF2648at 334.292 kb on - strand, within GFF2648at 334.297 kb on + strand, within GFF2648at 334.298 kb on - strand, within GFF2648at 334.298 kb on - strand, within GFF2648at 334.327 kb on + strand, within GFF2648at 334.327 kb on + strand, within GFF2648at 334.328 kb on - strand, within GFF2648at 334.446 kb on + strand, within GFF2648at 334.447 kb on - strand, within GFF2648at 334.447 kb on - strand, within GFF2648at 334.483 kb on + strand, within GFF2648at 334.483 kb on + strand, within GFF2648at 334.483 kb on + strand, within GFF2648at 334.483 kb on + strand, within GFF2648at 334.484 kb on - strand, within GFF2648at 334.484 kb on - strand, within GFF2648at 334.484 kb on - strand, within GFF2648at 334.484 kb on - strand, within GFF2648at 334.502 kb on - strand, within GFF2648at 334.619 kb on + strandat 334.619 kb on + strandat 334.690 kb on + strandat 334.690 kb on + strandat 334.690 kb on + strandat 334.690 kb on + strandat 334.714 kb on - strandat 334.837 kb on + strandat 334.838 kb on - strandat 334.838 kb on - strandat 334.838 kb on - strandat 334.848 kb on - strandat 334.851 kb on - strandat 335.020 kb on + strandat 335.021 kb on - strandat 335.021 kb on - strandat 335.021 kb on - strandat 335.021 kb on - strandat 335.071 kb on + strandat 335.071 kb on + strandat 335.072 kb on - strandat 335.072 kb on - strandat 335.110 kb on - strandat 335.110 kb on - strandat 335.124 kb on + strandat 335.124 kb on + strandat 335.125 kb on - strandat 335.125 kb on - strandat 335.125 kb on - strandat 335.125 kb on - strandat 335.253 kb on + strandat 335.253 kb on + strandat 335.253 kb on + strandat 335.254 kb on - strandat 335.254 kb on - strandat 335.273 kb on + strandat 335.273 kb on + strandat 335.274 kb on - strandat 335.274 kb on - strandat 335.310 kb on + strandat 335.311 kb on - strandat 335.311 kb on - strandat 335.311 kb on - strandat 335.321 kb on + strandat 335.330 kb on - strandat 335.330 kb on - strandat 335.352 kb on + strandat 335.352 kb on + strandat 335.352 kb on + strandat 335.353 kb on - strandat 335.353 kb on - strandat 335.412 kb on + strandat 335.412 kb on + strandat 335.413 kb on - strandat 335.413 kb on - strandat 335.413 kb on - strandat 335.486 kb on - strand, within GFF2649at 335.486 kb on - strand, within GFF2649

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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332,762 - GFF2647 0.15 -0.7
332,823 + GFF2647 0.22 +0.1
332,826 + GFF2647 0.22 -0.1
332,827 - GFF2647 0.22 +0.4
332,982 + GFF2647 0.39 +0.4
332,989 - GFF2647 0.40 -0.7
333,005 - GFF2647 0.42 -0.2
333,033 + GFF2647 0.45 +2.1
333,033 + GFF2647 0.45 +0.1
333,065 - GFF2647 0.48 +0.4
333,141 + GFF2647 0.57 +0.1
333,141 + GFF2647 0.57 +0.2
333,302 + GFF2647 0.74 -0.9
333,302 + GFF2647 0.74 +0.6
333,302 + GFF2647 0.74 -0.1
333,354 + GFF2647 0.80 -0.1
333,354 + GFF2647 0.80 -0.1
333,355 - GFF2647 0.80 -0.2
333,564 + +0.4
333,621 + -0.1
333,886 + GFF2648 0.26 +1.1
333,887 - GFF2648 0.26 -0.1
333,887 - GFF2648 0.26 +0.5
333,887 - GFF2648 0.26 -0.7
333,925 + GFF2648 0.30 +0.5
333,925 + GFF2648 0.30 +0.2
333,926 - GFF2648 0.30 -0.2
333,944 + GFF2648 0.32 -0.3
334,012 + GFF2648 0.39 +0.3
334,013 - GFF2648 0.39 +0.7
334,157 + GFF2648 0.53 -0.3
334,157 + GFF2648 0.53 -0.5
334,157 + GFF2648 0.53 -0.0
334,157 + GFF2648 0.53 +0.4
334,195 + GFF2648 0.57 -0.3
334,195 + GFF2648 0.57 -0.3
334,195 + GFF2648 0.57 -0.0
334,195 + GFF2648 0.57 +1.4
334,195 + GFF2648 0.57 +0.4
334,195 + GFF2648 0.57 -0.5
334,196 - GFF2648 0.57 -0.5
334,196 - GFF2648 0.57 -0.4
334,196 - GFF2648 0.57 -0.3
334,279 + GFF2648 0.65 -0.2
334,280 - GFF2648 0.65 +0.6
334,280 - GFF2648 0.65 +0.6
334,292 - GFF2648 0.66 -0.7
334,297 + GFF2648 0.67 -1.3
334,298 - GFF2648 0.67 +0.2
334,298 - GFF2648 0.67 -0.0
334,327 + GFF2648 0.70 -0.8
334,327 + GFF2648 0.70 -0.2
334,328 - GFF2648 0.70 +0.3
334,446 + GFF2648 0.81 -0.3
334,447 - GFF2648 0.81 +0.7
334,447 - GFF2648 0.81 -1.1
334,483 + GFF2648 0.85 -1.6
334,483 + GFF2648 0.85 +0.2
334,483 + GFF2648 0.85 -0.2
334,483 + GFF2648 0.85 +0.5
334,484 - GFF2648 0.85 +0.3
334,484 - GFF2648 0.85 +0.5
334,484 - GFF2648 0.85 -0.0
334,484 - GFF2648 0.85 +0.1
334,502 - GFF2648 0.87 -0.3
334,619 + -0.3
334,619 + -0.6
334,690 + -1.0
334,690 + +1.1
334,690 + +0.7
334,690 + -0.7
334,714 - +0.9
334,837 + -0.1
334,838 - -0.0
334,838 - +0.0
334,838 - -0.1
334,848 - -2.8
334,851 - -0.8
335,020 + -0.4
335,021 - +0.2
335,021 - -0.1
335,021 - -0.1
335,021 - +0.6
335,071 + -0.4
335,071 + +0.6
335,072 - -0.4
335,072 - +0.1
335,110 - -0.1
335,110 - -0.2
335,124 + -0.8
335,124 + -0.1
335,125 - -1.0
335,125 - +1.8
335,125 - -0.4
335,125 - -0.1
335,253 + +0.2
335,253 + -0.5
335,253 + -0.1
335,254 - -0.3
335,254 - -0.0
335,273 + +1.5
335,273 + -0.7
335,274 - -0.1
335,274 - -0.4
335,310 + +0.9
335,311 - -0.3
335,311 - +0.2
335,311 - +0.6
335,321 + -0.1
335,330 - -0.7
335,330 - -0.4
335,352 + +1.1
335,352 + +0.2
335,352 + +0.0
335,353 - +0.4
335,353 - -0.5
335,412 + -0.1
335,412 + -0.2
335,413 - -0.5
335,413 - -0.1
335,413 - +0.4
335,486 - GFF2649 0.16 +0.4
335,486 - GFF2649 0.16 +0.2

Or see this region's nucleotide sequence