Strain Fitness in Xanthobacter sp. DMC5 around GFF2646

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2646 and GFF2647 are separated by 191 nucleotides GFF2646 - Inner membrane transport protein YdhP, at 331,189 to 332,436 GFF2646 GFF2647 - HTH-type transcriptional regulator DmlR, at 332,628 to 333,533 GFF2647 Position (kb) 331 332 333Strain fitness (log2 ratio) -2 -1 0 1 2at 330.201 kb on - strandat 330.271 kb on + strandat 330.277 kb on + strandat 330.277 kb on + strandat 330.277 kb on + strandat 330.278 kb on - strandat 330.278 kb on - strandat 330.285 kb on + strandat 330.285 kb on + strandat 330.286 kb on - strandat 330.287 kb on + strandat 330.287 kb on + strandat 330.287 kb on + strandat 330.288 kb on - strandat 330.288 kb on - strandat 330.315 kb on + strandat 330.315 kb on + strandat 330.354 kb on - strandat 330.503 kb on + strandat 330.503 kb on + strandat 330.503 kb on + strandat 330.503 kb on + strandat 330.504 kb on - strandat 330.504 kb on - strandat 330.504 kb on - strandat 330.504 kb on - strandat 330.504 kb on - strandat 330.504 kb on - strandat 330.504 kb on - strandat 330.504 kb on - strandat 330.546 kb on + strandat 330.565 kb on + strandat 330.566 kb on - strandat 330.566 kb on - strandat 330.568 kb on - strandat 330.629 kb on + strandat 330.629 kb on + strandat 330.630 kb on - strandat 330.630 kb on - strandat 330.751 kb on + strandat 330.949 kb on + strandat 330.949 kb on + strandat 330.949 kb on + strandat 331.024 kb on - strandat 331.062 kb on - strandat 331.101 kb on - strandat 331.101 kb on - strandat 331.446 kb on + strand, within GFF2646at 331.446 kb on + strand, within GFF2646at 331.535 kb on + strand, within GFF2646at 331.536 kb on - strand, within GFF2646at 331.536 kb on - strand, within GFF2646at 331.562 kb on + strand, within GFF2646at 331.605 kb on + strand, within GFF2646at 331.605 kb on + strand, within GFF2646at 331.605 kb on + strand, within GFF2646at 331.605 kb on + strand, within GFF2646at 331.605 kb on + strand, within GFF2646at 331.605 kb on + strand, within GFF2646at 331.606 kb on - strand, within GFF2646at 331.606 kb on - strand, within GFF2646at 331.689 kb on + strand, within GFF2646at 331.689 kb on + strand, within GFF2646at 331.689 kb on + strand, within GFF2646at 331.689 kb on + strand, within GFF2646at 331.690 kb on - strand, within GFF2646at 331.690 kb on - strand, within GFF2646at 331.690 kb on - strand, within GFF2646at 331.691 kb on + strand, within GFF2646at 331.691 kb on + strand, within GFF2646at 331.691 kb on + strand, within GFF2646at 331.691 kb on + strand, within GFF2646at 331.691 kb on + strand, within GFF2646at 331.691 kb on + strand, within GFF2646at 331.692 kb on - strand, within GFF2646at 331.692 kb on - strand, within GFF2646at 331.755 kb on + strand, within GFF2646at 331.755 kb on + strand, within GFF2646at 331.755 kb on + strand, within GFF2646at 331.755 kb on + strand, within GFF2646at 331.755 kb on + strand, within GFF2646at 331.755 kb on + strand, within GFF2646at 331.756 kb on - strand, within GFF2646at 331.868 kb on + strand, within GFF2646at 331.868 kb on + strand, within GFF2646at 331.868 kb on + strand, within GFF2646at 331.869 kb on - strand, within GFF2646at 331.869 kb on - strand, within GFF2646at 331.869 kb on - strand, within GFF2646at 331.869 kb on - strand, within GFF2646at 332.024 kb on + strand, within GFF2646at 332.024 kb on + strand, within GFF2646at 332.024 kb on + strand, within GFF2646at 332.024 kb on + strand, within GFF2646at 332.025 kb on - strand, within GFF2646at 332.207 kb on + strand, within GFF2646at 332.208 kb on - strand, within GFF2646at 332.208 kb on - strand, within GFF2646at 332.208 kb on - strand, within GFF2646at 332.208 kb on - strand, within GFF2646at 332.518 kb on + strandat 332.519 kb on - strandat 332.588 kb on + strandat 332.588 kb on + strandat 332.588 kb on + strandat 332.589 kb on - strandat 332.589 kb on - strandat 332.762 kb on - strand, within GFF2647at 332.823 kb on + strand, within GFF2647at 332.826 kb on + strand, within GFF2647at 332.827 kb on - strand, within GFF2647at 332.982 kb on + strand, within GFF2647at 332.989 kb on - strand, within GFF2647at 333.005 kb on - strand, within GFF2647at 333.033 kb on + strand, within GFF2647at 333.033 kb on + strand, within GFF2647at 333.065 kb on - strand, within GFF2647at 333.141 kb on + strand, within GFF2647at 333.141 kb on + strand, within GFF2647at 333.302 kb on + strand, within GFF2647at 333.302 kb on + strand, within GFF2647at 333.302 kb on + strand, within GFF2647at 333.354 kb on + strand, within GFF2647at 333.354 kb on + strand, within GFF2647at 333.355 kb on - strand, within GFF2647

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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330,201 - +0.2
330,271 + -0.9
330,277 + +0.1
330,277 + -0.7
330,277 + -0.3
330,278 - -0.1
330,278 - -0.2
330,285 + +0.1
330,285 + -0.4
330,286 - +0.3
330,287 + +0.1
330,287 + -0.8
330,287 + -0.0
330,288 - -0.0
330,288 - -1.1
330,315 + +0.1
330,315 + -0.4
330,354 - -0.4
330,503 + +0.1
330,503 + +1.3
330,503 + -0.5
330,503 + -0.2
330,504 - -0.3
330,504 - +0.9
330,504 - -0.1
330,504 - -0.3
330,504 - -0.2
330,504 - +0.4
330,504 - +0.6
330,504 - -1.4
330,546 + -0.0
330,565 + -0.0
330,566 - +0.2
330,566 - +0.3
330,568 - +0.4
330,629 + -0.5
330,629 + -0.3
330,630 - +0.6
330,630 - +0.5
330,751 + -2.0
330,949 + +0.4
330,949 + -0.7
330,949 + -0.6
331,024 - -0.3
331,062 - +0.5
331,101 - +1.2
331,101 - -0.8
331,446 + GFF2646 0.21 +0.7
331,446 + GFF2646 0.21 -0.1
331,535 + GFF2646 0.28 +0.2
331,536 - GFF2646 0.28 +0.2
331,536 - GFF2646 0.28 +0.1
331,562 + GFF2646 0.30 +0.4
331,605 + GFF2646 0.33 -0.4
331,605 + GFF2646 0.33 +0.1
331,605 + GFF2646 0.33 +0.1
331,605 + GFF2646 0.33 +0.2
331,605 + GFF2646 0.33 +0.3
331,605 + GFF2646 0.33 +1.2
331,606 - GFF2646 0.33 -0.0
331,606 - GFF2646 0.33 -0.5
331,689 + GFF2646 0.40 +0.2
331,689 + GFF2646 0.40 +0.8
331,689 + GFF2646 0.40 -0.6
331,689 + GFF2646 0.40 -0.8
331,690 - GFF2646 0.40 -0.9
331,690 - GFF2646 0.40 -0.3
331,690 - GFF2646 0.40 -1.2
331,691 + GFF2646 0.40 -1.7
331,691 + GFF2646 0.40 -0.3
331,691 + GFF2646 0.40 -0.0
331,691 + GFF2646 0.40 -0.6
331,691 + GFF2646 0.40 +0.1
331,691 + GFF2646 0.40 -0.2
331,692 - GFF2646 0.40 -0.6
331,692 - GFF2646 0.40 -1.7
331,755 + GFF2646 0.45 +0.2
331,755 + GFF2646 0.45 +0.6
331,755 + GFF2646 0.45 -0.1
331,755 + GFF2646 0.45 -1.3
331,755 + GFF2646 0.45 +0.2
331,755 + GFF2646 0.45 +0.3
331,756 - GFF2646 0.45 +0.2
331,868 + GFF2646 0.54 -0.5
331,868 + GFF2646 0.54 -0.1
331,868 + GFF2646 0.54 +0.5
331,869 - GFF2646 0.54 -0.8
331,869 - GFF2646 0.54 +0.7
331,869 - GFF2646 0.54 -0.8
331,869 - GFF2646 0.54 -0.4
332,024 + GFF2646 0.67 -0.6
332,024 + GFF2646 0.67 -0.7
332,024 + GFF2646 0.67 -0.5
332,024 + GFF2646 0.67 -0.3
332,025 - GFF2646 0.67 +0.7
332,207 + GFF2646 0.82 +1.2
332,208 - GFF2646 0.82 -0.3
332,208 - GFF2646 0.82 -0.1
332,208 - GFF2646 0.82 +0.3
332,208 - GFF2646 0.82 +0.2
332,518 + +0.1
332,519 - +0.0
332,588 + -0.3
332,588 + -0.7
332,588 + +0.6
332,589 - +0.5
332,589 - -0.1
332,762 - GFF2647 0.15 -0.7
332,823 + GFF2647 0.22 +0.1
332,826 + GFF2647 0.22 -0.1
332,827 - GFF2647 0.22 +0.4
332,982 + GFF2647 0.39 +0.4
332,989 - GFF2647 0.40 -0.7
333,005 - GFF2647 0.42 -0.2
333,033 + GFF2647 0.45 +2.1
333,033 + GFF2647 0.45 +0.1
333,065 - GFF2647 0.48 +0.4
333,141 + GFF2647 0.57 +0.1
333,141 + GFF2647 0.57 +0.2
333,302 + GFF2647 0.74 -0.9
333,302 + GFF2647 0.74 +0.6
333,302 + GFF2647 0.74 -0.1
333,354 + GFF2647 0.80 -0.1
333,354 + GFF2647 0.80 -0.1
333,355 - GFF2647 0.80 -0.2

Or see this region's nucleotide sequence