Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2638 and GFF2639 overlap by 4 nucleotides GFF2639 and GFF2640 are separated by 9 nucleotides GFF2640 and GFF2641 overlap by 4 nucleotides
GFF2638 - Type IV secretion system protein virB4, at 322,153 to 324,582
GFF2638
GFF2639 - hypothetical protein, at 324,579 to 325,313
GFF2639
GFF2640 - hypothetical protein, at 325,323 to 325,583
GFF2640
GFF2641 - hypothetical protein, at 325,580 to 326,860
GFF2641
Position (kb) 324
325
326 Strain fitness (log2 ratio) -1
0
1
2 at 323.893 kb on + strand, within GFF2638 at 323.894 kb on - strand, within GFF2638 at 324.019 kb on + strand, within GFF2638 at 324.019 kb on + strand, within GFF2638 at 324.020 kb on - strand, within GFF2638 at 324.020 kb on - strand, within GFF2638 at 324.020 kb on - strand, within GFF2638 at 324.020 kb on - strand, within GFF2638 at 324.020 kb on - strand, within GFF2638 at 324.020 kb on - strand, within GFF2638 at 324.256 kb on - strand, within GFF2638 at 324.358 kb on + strand at 324.358 kb on + strand at 324.358 kb on + strand at 324.358 kb on + strand at 324.359 kb on - strand at 324.362 kb on - strand at 324.362 kb on - strand at 324.362 kb on - strand at 324.474 kb on - strand at 324.658 kb on - strand, within GFF2639 at 324.658 kb on - strand, within GFF2639 at 324.658 kb on - strand, within GFF2639 at 324.658 kb on - strand, within GFF2639 at 324.658 kb on - strand, within GFF2639 at 324.658 kb on - strand, within GFF2639 at 324.667 kb on - strand, within GFF2639 at 324.667 kb on - strand, within GFF2639 at 324.667 kb on - strand, within GFF2639 at 324.681 kb on + strand, within GFF2639 at 324.681 kb on + strand, within GFF2639 at 324.681 kb on + strand, within GFF2639 at 324.682 kb on - strand, within GFF2639 at 324.682 kb on - strand, within GFF2639 at 324.682 kb on - strand, within GFF2639 at 324.801 kb on + strand, within GFF2639 at 324.801 kb on + strand, within GFF2639 at 324.801 kb on + strand, within GFF2639 at 324.801 kb on + strand, within GFF2639 at 324.801 kb on + strand, within GFF2639 at 324.802 kb on - strand, within GFF2639 at 324.802 kb on - strand, within GFF2639 at 324.802 kb on - strand, within GFF2639 at 324.876 kb on + strand, within GFF2639 at 324.877 kb on - strand, within GFF2639 at 326.024 kb on - strand, within GFF2641 at 326.261 kb on + strand, within GFF2641 at 326.261 kb on + strand, within GFF2641 at 326.261 kb on + strand, within GFF2641 at 326.261 kb on + strand, within GFF2641 at 326.261 kb on + strand, within GFF2641 at 326.261 kb on + strand, within GFF2641 at 326.262 kb on - strand, within GFF2641 at 326.262 kb on - strand, within GFF2641 at 326.262 kb on - strand, within GFF2641
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 323,893 + GFF2638 0.72 -0.2 323,894 - GFF2638 0.72 +0.1 324,019 + GFF2638 0.77 +0.3 324,019 + GFF2638 0.77 +0.1 324,020 - GFF2638 0.77 -1.3 324,020 - GFF2638 0.77 -0.4 324,020 - GFF2638 0.77 -0.4 324,020 - GFF2638 0.77 -0.1 324,020 - GFF2638 0.77 -0.3 324,020 - GFF2638 0.77 -0.1 324,256 - GFF2638 0.87 -1.4 324,358 + +1.5 324,358 + +1.3 324,358 + +0.5 324,358 + +2.3 324,359 - +0.1 324,362 - +0.6 324,362 - -1.2 324,362 - +0.5 324,474 - -0.3 324,658 - GFF2639 0.11 -0.6 324,658 - GFF2639 0.11 +1.4 324,658 - GFF2639 0.11 -0.5 324,658 - GFF2639 0.11 +0.1 324,658 - GFF2639 0.11 +0.3 324,658 - GFF2639 0.11 +0.4 324,667 - GFF2639 0.12 +0.3 324,667 - GFF2639 0.12 -0.4 324,667 - GFF2639 0.12 -0.2 324,681 + GFF2639 0.14 +0.4 324,681 + GFF2639 0.14 +0.8 324,681 + GFF2639 0.14 +0.4 324,682 - GFF2639 0.14 -0.1 324,682 - GFF2639 0.14 +0.3 324,682 - GFF2639 0.14 +0.2 324,801 + GFF2639 0.30 -0.8 324,801 + GFF2639 0.30 -0.9 324,801 + GFF2639 0.30 +0.3 324,801 + GFF2639 0.30 -1.0 324,801 + GFF2639 0.30 +0.1 324,802 - GFF2639 0.30 -0.8 324,802 - GFF2639 0.30 -0.3 324,802 - GFF2639 0.30 -0.1 324,876 + GFF2639 0.40 -0.4 324,877 - GFF2639 0.41 -0.3 326,024 - GFF2641 0.35 -0.5 326,261 + GFF2641 0.53 +0.5 326,261 + GFF2641 0.53 +0.5 326,261 + GFF2641 0.53 +0.8 326,261 + GFF2641 0.53 -0.3 326,261 + GFF2641 0.53 +1.3 326,261 + GFF2641 0.53 +0.4 326,262 - GFF2641 0.53 +0.4 326,262 - GFF2641 0.53 -0.2 326,262 - GFF2641 0.53 -0.4
Or see this region's nucleotide sequence