Strain Fitness in Xanthobacter sp. DMC5 around GFF2633

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2632 and GFF2633 are separated by 288 nucleotidesGFF2633 and GFF2634 are separated by 101 nucleotides GFF2632 - hypothetical protein, at 317,467 to 318,333 GFF2632 GFF2633 - putative L,D-transpeptidase YbiS, at 318,622 to 319,278 GFF2633 GFF2634 - HTH-type transcriptional regulator DmlR, at 319,380 to 320,291 GFF2634 Position (kb) 318 319 320Strain fitness (log2 ratio) -2 -1 0 1 2at 317.646 kb on - strand, within GFF2632at 317.748 kb on + strand, within GFF2632at 317.748 kb on + strand, within GFF2632at 317.748 kb on + strand, within GFF2632at 317.748 kb on + strand, within GFF2632at 317.748 kb on + strand, within GFF2632at 317.748 kb on + strand, within GFF2632at 317.748 kb on + strand, within GFF2632at 317.749 kb on - strand, within GFF2632at 317.749 kb on - strand, within GFF2632at 317.749 kb on - strand, within GFF2632at 317.749 kb on - strand, within GFF2632at 317.749 kb on - strand, within GFF2632at 317.749 kb on - strand, within GFF2632at 317.749 kb on - strand, within GFF2632at 317.749 kb on - strand, within GFF2632at 317.749 kb on - strand, within GFF2632at 317.749 kb on - strand, within GFF2632at 317.749 kb on - strand, within GFF2632at 317.749 kb on - strand, within GFF2632at 317.749 kb on - strand, within GFF2632at 317.750 kb on + strand, within GFF2632at 317.750 kb on + strand, within GFF2632at 317.751 kb on - strand, within GFF2632at 317.751 kb on - strand, within GFF2632at 317.776 kb on + strand, within GFF2632at 317.777 kb on - strand, within GFF2632at 317.803 kb on + strand, within GFF2632at 317.803 kb on + strand, within GFF2632at 317.804 kb on - strand, within GFF2632at 317.951 kb on - strand, within GFF2632at 317.960 kb on - strand, within GFF2632at 317.960 kb on - strand, within GFF2632at 317.989 kb on + strand, within GFF2632at 317.989 kb on + strand, within GFF2632at 317.989 kb on + strand, within GFF2632at 317.989 kb on + strand, within GFF2632at 317.990 kb on - strand, within GFF2632at 317.990 kb on - strand, within GFF2632at 317.990 kb on - strand, within GFF2632at 317.990 kb on - strand, within GFF2632at 318.232 kb on - strand, within GFF2632at 318.244 kb on + strand, within GFF2632at 318.244 kb on + strand, within GFF2632at 318.244 kb on + strand, within GFF2632at 318.245 kb on - strand, within GFF2632at 318.245 kb on - strand, within GFF2632at 318.287 kb on + strandat 318.307 kb on - strandat 318.307 kb on - strandat 318.411 kb on - strandat 318.411 kb on - strandat 318.411 kb on - strandat 318.512 kb on + strandat 318.512 kb on + strandat 318.513 kb on - strandat 318.557 kb on - strandat 318.575 kb on - strandat 318.597 kb on + strandat 318.597 kb on + strandat 318.598 kb on - strandat 318.598 kb on - strandat 318.600 kb on + strandat 318.658 kb on + strandat 318.668 kb on + strandat 318.669 kb on - strandat 318.681 kb on + strandat 318.682 kb on - strandat 318.734 kb on + strand, within GFF2633at 318.768 kb on + strand, within GFF2633at 318.768 kb on + strand, within GFF2633at 318.769 kb on - strand, within GFF2633at 318.786 kb on - strand, within GFF2633at 318.791 kb on + strand, within GFF2633at 318.791 kb on + strand, within GFF2633at 318.854 kb on + strand, within GFF2633at 318.855 kb on - strand, within GFF2633at 318.855 kb on - strand, within GFF2633at 318.855 kb on - strand, within GFF2633at 318.855 kb on - strand, within GFF2633at 319.010 kb on + strand, within GFF2633at 319.010 kb on + strand, within GFF2633at 319.010 kb on + strand, within GFF2633at 319.010 kb on + strand, within GFF2633at 319.010 kb on + strand, within GFF2633at 319.010 kb on + strand, within GFF2633at 319.011 kb on - strand, within GFF2633at 319.011 kb on - strand, within GFF2633at 319.011 kb on - strand, within GFF2633at 319.011 kb on - strand, within GFF2633at 319.016 kb on + strand, within GFF2633at 319.016 kb on + strand, within GFF2633at 319.016 kb on + strand, within GFF2633at 319.017 kb on - strand, within GFF2633at 319.017 kb on - strand, within GFF2633at 319.017 kb on - strand, within GFF2633at 319.068 kb on - strand, within GFF2633at 319.154 kb on + strand, within GFF2633at 319.154 kb on + strand, within GFF2633at 319.154 kb on + strand, within GFF2633at 319.154 kb on + strand, within GFF2633at 319.154 kb on + strand, within GFF2633at 319.154 kb on + strand, within GFF2633at 319.154 kb on + strand, within GFF2633at 319.154 kb on + strand, within GFF2633at 319.154 kb on + strand, within GFF2633at 319.154 kb on + strand, within GFF2633at 319.155 kb on - strand, within GFF2633at 319.155 kb on - strand, within GFF2633at 319.155 kb on - strand, within GFF2633at 319.155 kb on - strand, within GFF2633at 319.155 kb on - strand, within GFF2633at 319.155 kb on - strand, within GFF2633at 319.155 kb on - strand, within GFF2633at 319.155 kb on - strand, within GFF2633at 319.155 kb on - strand, within GFF2633at 319.155 kb on - strand, within GFF2633at 319.200 kb on + strand, within GFF2633at 319.200 kb on + strand, within GFF2633at 319.346 kb on - strandat 319.358 kb on + strandat 319.370 kb on + strandat 319.377 kb on + strandat 319.378 kb on - strandat 319.378 kb on - strandat 319.378 kb on - strandat 319.378 kb on - strandat 319.576 kb on - strand, within GFF2634at 319.576 kb on - strand, within GFF2634at 319.666 kb on + strand, within GFF2634at 319.666 kb on + strand, within GFF2634at 319.666 kb on + strand, within GFF2634at 319.666 kb on + strand, within GFF2634at 319.667 kb on - strand, within GFF2634at 319.667 kb on - strand, within GFF2634at 319.667 kb on - strand, within GFF2634at 319.667 kb on - strand, within GFF2634at 319.780 kb on + strand, within GFF2634at 319.780 kb on + strand, within GFF2634at 319.780 kb on + strand, within GFF2634at 319.780 kb on + strand, within GFF2634at 319.780 kb on + strand, within GFF2634at 319.781 kb on - strand, within GFF2634at 319.781 kb on - strand, within GFF2634at 319.781 kb on - strand, within GFF2634at 319.812 kb on + strand, within GFF2634at 319.813 kb on - strand, within GFF2634at 319.890 kb on + strand, within GFF2634at 319.891 kb on - strand, within GFF2634at 319.999 kb on + strand, within GFF2634at 320.160 kb on + strand, within GFF2634at 320.160 kb on + strand, within GFF2634at 320.160 kb on + strand, within GFF2634at 320.160 kb on + strand, within GFF2634at 320.161 kb on - strand, within GFF2634at 320.161 kb on - strand, within GFF2634at 320.161 kb on - strand, within GFF2634at 320.161 kb on - strand, within GFF2634at 320.161 kb on - strand, within GFF2634at 320.193 kb on + strand, within GFF2634at 320.193 kb on + strand, within GFF2634at 320.193 kb on + strand, within GFF2634at 320.194 kb on - strand, within GFF2634at 320.194 kb on - strand, within GFF2634at 320.208 kb on + strandat 320.209 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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317,646 - GFF2632 0.21 +0.4
317,748 + GFF2632 0.32 +0.1
317,748 + GFF2632 0.32 -0.3
317,748 + GFF2632 0.32 +1.5
317,748 + GFF2632 0.32 -0.1
317,748 + GFF2632 0.32 -0.1
317,748 + GFF2632 0.32 -0.3
317,748 + GFF2632 0.32 -0.6
317,749 - GFF2632 0.33 -0.3
317,749 - GFF2632 0.33 +0.5
317,749 - GFF2632 0.33 +0.4
317,749 - GFF2632 0.33 -1.0
317,749 - GFF2632 0.33 -0.2
317,749 - GFF2632 0.33 -0.3
317,749 - GFF2632 0.33 -1.0
317,749 - GFF2632 0.33 -0.5
317,749 - GFF2632 0.33 +1.2
317,749 - GFF2632 0.33 +0.4
317,749 - GFF2632 0.33 +0.2
317,749 - GFF2632 0.33 -0.6
317,749 - GFF2632 0.33 -0.1
317,750 + GFF2632 0.33 -0.5
317,750 + GFF2632 0.33 +0.2
317,751 - GFF2632 0.33 +0.3
317,751 - GFF2632 0.33 -0.2
317,776 + GFF2632 0.36 -1.5
317,777 - GFF2632 0.36 +0.5
317,803 + GFF2632 0.39 +0.4
317,803 + GFF2632 0.39 -0.7
317,804 - GFF2632 0.39 -0.0
317,951 - GFF2632 0.56 +0.1
317,960 - GFF2632 0.57 +0.7
317,960 - GFF2632 0.57 +1.1
317,989 + GFF2632 0.60 +0.2
317,989 + GFF2632 0.60 -0.6
317,989 + GFF2632 0.60 -1.8
317,989 + GFF2632 0.60 -0.7
317,990 - GFF2632 0.60 -0.3
317,990 - GFF2632 0.60 +0.6
317,990 - GFF2632 0.60 -0.4
317,990 - GFF2632 0.60 -0.0
318,232 - GFF2632 0.88 -0.6
318,244 + GFF2632 0.90 +0.3
318,244 + GFF2632 0.90 -1.1
318,244 + GFF2632 0.90 +0.3
318,245 - GFF2632 0.90 +0.8
318,245 - GFF2632 0.90 +0.3
318,287 + -0.1
318,307 - -0.4
318,307 - +0.1
318,411 - +0.6
318,411 - +0.3
318,411 - -2.4
318,512 + -0.1
318,512 + -0.4
318,513 - -1.4
318,557 - +0.3
318,575 - +0.6
318,597 + +0.0
318,597 + -0.5
318,598 - +0.1
318,598 - +0.0
318,600 + -0.0
318,658 + -0.2
318,668 + -0.5
318,669 - +0.3
318,681 + -1.1
318,682 - +0.4
318,734 + GFF2633 0.17 +0.3
318,768 + GFF2633 0.22 -0.1
318,768 + GFF2633 0.22 -0.2
318,769 - GFF2633 0.22 -1.6
318,786 - GFF2633 0.25 -0.0
318,791 + GFF2633 0.26 -0.2
318,791 + GFF2633 0.26 +0.6
318,854 + GFF2633 0.35 -0.1
318,855 - GFF2633 0.35 -0.5
318,855 - GFF2633 0.35 -0.1
318,855 - GFF2633 0.35 +0.2
318,855 - GFF2633 0.35 -0.7
319,010 + GFF2633 0.59 -1.7
319,010 + GFF2633 0.59 -0.1
319,010 + GFF2633 0.59 +0.4
319,010 + GFF2633 0.59 -0.3
319,010 + GFF2633 0.59 +0.6
319,010 + GFF2633 0.59 +1.8
319,011 - GFF2633 0.59 -0.9
319,011 - GFF2633 0.59 -0.9
319,011 - GFF2633 0.59 -0.3
319,011 - GFF2633 0.59 +0.5
319,016 + GFF2633 0.60 -0.1
319,016 + GFF2633 0.60 -0.7
319,016 + GFF2633 0.60 -0.5
319,017 - GFF2633 0.60 -0.1
319,017 - GFF2633 0.60 -0.1
319,017 - GFF2633 0.60 +0.6
319,068 - GFF2633 0.68 -1.0
319,154 + GFF2633 0.81 -0.0
319,154 + GFF2633 0.81 -0.3
319,154 + GFF2633 0.81 -0.1
319,154 + GFF2633 0.81 -0.1
319,154 + GFF2633 0.81 -0.4
319,154 + GFF2633 0.81 +0.9
319,154 + GFF2633 0.81 -1.0
319,154 + GFF2633 0.81 -0.4
319,154 + GFF2633 0.81 -0.8
319,154 + GFF2633 0.81 +0.2
319,155 - GFF2633 0.81 +0.3
319,155 - GFF2633 0.81 +0.3
319,155 - GFF2633 0.81 -0.8
319,155 - GFF2633 0.81 -1.5
319,155 - GFF2633 0.81 +0.6
319,155 - GFF2633 0.81 +0.7
319,155 - GFF2633 0.81 +0.2
319,155 - GFF2633 0.81 -0.1
319,155 - GFF2633 0.81 +0.3
319,155 - GFF2633 0.81 +0.7
319,200 + GFF2633 0.88 -0.4
319,200 + GFF2633 0.88 +0.2
319,346 - -0.2
319,358 + +1.6
319,370 + -0.5
319,377 + -0.4
319,378 - -0.2
319,378 - -0.2
319,378 - +0.1
319,378 - +0.4
319,576 - GFF2634 0.21 -0.3
319,576 - GFF2634 0.21 -0.4
319,666 + GFF2634 0.31 -0.1
319,666 + GFF2634 0.31 -0.7
319,666 + GFF2634 0.31 -0.8
319,666 + GFF2634 0.31 +0.2
319,667 - GFF2634 0.31 -1.4
319,667 - GFF2634 0.31 -0.6
319,667 - GFF2634 0.31 -0.8
319,667 - GFF2634 0.31 -1.0
319,780 + GFF2634 0.44 +0.1
319,780 + GFF2634 0.44 +0.5
319,780 + GFF2634 0.44 -0.2
319,780 + GFF2634 0.44 -0.1
319,780 + GFF2634 0.44 +0.1
319,781 - GFF2634 0.44 -0.5
319,781 - GFF2634 0.44 -1.2
319,781 - GFF2634 0.44 +0.5
319,812 + GFF2634 0.47 -1.5
319,813 - GFF2634 0.47 +0.4
319,890 + GFF2634 0.56 +0.1
319,891 - GFF2634 0.56 -1.7
319,999 + GFF2634 0.68 -1.0
320,160 + GFF2634 0.86 +0.7
320,160 + GFF2634 0.86 -1.1
320,160 + GFF2634 0.86 +1.2
320,160 + GFF2634 0.86 +0.1
320,161 - GFF2634 0.86 -0.4
320,161 - GFF2634 0.86 -0.2
320,161 - GFF2634 0.86 +0.0
320,161 - GFF2634 0.86 -0.1
320,161 - GFF2634 0.86 +0.0
320,193 + GFF2634 0.89 -0.1
320,193 + GFF2634 0.89 +0.2
320,193 + GFF2634 0.89 +0.2
320,194 - GFF2634 0.89 -0.8
320,194 - GFF2634 0.89 -0.6
320,208 + -0.4
320,209 - +0.2

Or see this region's nucleotide sequence