Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2623 and GFF2624 are separated by 356 nucleotides GFF2624 and GFF2625 are separated by 484 nucleotides GFF2625 and GFF2626 are separated by 337 nucleotides GFF2626 and GFF2627 are separated by 36 nucleotides
GFF2623 - hypothetical protein, at 308,772 to 309,563
GFF2623
GFF2624 - hypothetical protein, at 309,920 to 310,060
GFF2624
GFF2625 - Imidazolonepropionase, at 310,545 to 312,389
GFF2625
GFF2626 - L-carnitine dehydrogenase, at 312,727 to 313,020
GFF2626
GFF2627 - L-carnitine dehydrogenase, at 313,057 to 313,440
GFF2627
Position (kb) 310
311
312
313 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 309.570 kb on + strand at 309.570 kb on + strand at 309.570 kb on + strand at 309.571 kb on - strand at 309.571 kb on - strand at 309.571 kb on - strand at 309.571 kb on - strand at 309.571 kb on - strand at 309.571 kb on - strand at 309.571 kb on - strand at 309.571 kb on - strand at 309.694 kb on + strand at 309.694 kb on + strand at 309.694 kb on + strand at 309.694 kb on + strand at 309.694 kb on + strand at 309.694 kb on + strand at 309.695 kb on - strand at 309.769 kb on + strand at 309.770 kb on - strand at 309.770 kb on - strand at 309.789 kb on + strand at 309.816 kb on + strand at 309.816 kb on + strand at 309.817 kb on - strand at 309.817 kb on - strand at 309.881 kb on + strand at 309.881 kb on + strand at 309.882 kb on - strand at 309.882 kb on - strand at 309.882 kb on - strand at 309.882 kb on - strand at 309.970 kb on + strand, within GFF2624 at 309.970 kb on + strand, within GFF2624 at 309.970 kb on + strand, within GFF2624 at 309.970 kb on + strand, within GFF2624 at 309.970 kb on + strand, within GFF2624 at 309.970 kb on + strand, within GFF2624 at 309.971 kb on - strand, within GFF2624 at 309.971 kb on - strand, within GFF2624 at 309.971 kb on - strand, within GFF2624 at 309.992 kb on + strand, within GFF2624 at 309.993 kb on - strand, within GFF2624 at 310.011 kb on + strand, within GFF2624 at 310.011 kb on + strand, within GFF2624 at 310.011 kb on + strand, within GFF2624 at 310.011 kb on + strand, within GFF2624 at 310.011 kb on + strand, within GFF2624 at 310.011 kb on + strand, within GFF2624 at 310.012 kb on - strand, within GFF2624 at 310.058 kb on + strand at 310.109 kb on - strand at 310.111 kb on - strand at 310.112 kb on + strand at 310.113 kb on - strand at 310.166 kb on + strand at 310.166 kb on + strand at 310.167 kb on - strand at 310.167 kb on - strand at 310.167 kb on - strand at 310.208 kb on + strand at 310.209 kb on - strand at 310.209 kb on - strand at 310.209 kb on - strand at 310.222 kb on - strand at 310.230 kb on - strand at 310.351 kb on + strand at 310.351 kb on + strand at 310.352 kb on - strand at 310.369 kb on - strand at 310.429 kb on - strand at 310.429 kb on - strand at 310.487 kb on + strand at 310.581 kb on - strand at 310.716 kb on - strand at 310.716 kb on - strand at 310.737 kb on - strand, within GFF2625 at 310.812 kb on + strand, within GFF2625 at 310.812 kb on + strand, within GFF2625 at 310.813 kb on - strand, within GFF2625 at 310.813 kb on - strand, within GFF2625 at 310.813 kb on - strand, within GFF2625 at 310.913 kb on + strand, within GFF2625 at 310.914 kb on - strand, within GFF2625 at 310.914 kb on - strand, within GFF2625 at 310.914 kb on - strand, within GFF2625 at 310.966 kb on + strand, within GFF2625 at 310.966 kb on + strand, within GFF2625 at 310.967 kb on - strand, within GFF2625 at 311.127 kb on + strand, within GFF2625 at 311.127 kb on + strand, within GFF2625 at 311.128 kb on - strand, within GFF2625 at 311.128 kb on - strand, within GFF2625 at 311.128 kb on - strand, within GFF2625 at 311.128 kb on - strand, within GFF2625 at 311.128 kb on - strand, within GFF2625 at 311.128 kb on - strand, within GFF2625 at 311.128 kb on - strand, within GFF2625 at 311.229 kb on + strand, within GFF2625 at 311.229 kb on + strand, within GFF2625 at 311.230 kb on - strand, within GFF2625 at 311.230 kb on - strand, within GFF2625 at 311.232 kb on + strand, within GFF2625 at 311.233 kb on - strand, within GFF2625 at 311.233 kb on - strand, within GFF2625 at 311.233 kb on - strand, within GFF2625 at 311.323 kb on + strand, within GFF2625 at 311.323 kb on + strand, within GFF2625 at 311.324 kb on - strand, within GFF2625 at 311.324 kb on - strand, within GFF2625 at 311.356 kb on + strand, within GFF2625 at 311.357 kb on - strand, within GFF2625 at 311.374 kb on - strand, within GFF2625 at 311.388 kb on + strand, within GFF2625 at 311.388 kb on + strand, within GFF2625 at 311.388 kb on + strand, within GFF2625 at 311.388 kb on + strand, within GFF2625 at 311.389 kb on - strand, within GFF2625 at 311.389 kb on - strand, within GFF2625 at 311.389 kb on - strand, within GFF2625 at 311.389 kb on - strand, within GFF2625 at 311.389 kb on - strand, within GFF2625 at 311.389 kb on - strand, within GFF2625 at 311.389 kb on - strand, within GFF2625 at 311.390 kb on + strand, within GFF2625 at 311.390 kb on + strand, within GFF2625 at 311.391 kb on - strand, within GFF2625 at 311.391 kb on - strand, within GFF2625 at 311.661 kb on - strand, within GFF2625 at 311.711 kb on + strand, within GFF2625 at 311.711 kb on + strand, within GFF2625 at 311.711 kb on + strand, within GFF2625 at 311.711 kb on + strand, within GFF2625 at 311.943 kb on + strand, within GFF2625 at 311.944 kb on - strand, within GFF2625 at 311.956 kb on - strand, within GFF2625 at 311.956 kb on - strand, within GFF2625 at 311.967 kb on + strand, within GFF2625 at 311.968 kb on - strand, within GFF2625 at 311.968 kb on - strand, within GFF2625 at 311.968 kb on - strand, within GFF2625 at 311.969 kb on + strand, within GFF2625 at 311.969 kb on + strand, within GFF2625 at 311.969 kb on + strand, within GFF2625 at 311.969 kb on + strand, within GFF2625 at 311.969 kb on + strand, within GFF2625 at 311.969 kb on + strand, within GFF2625 at 311.969 kb on + strand, within GFF2625 at 311.970 kb on - strand, within GFF2625 at 311.970 kb on - strand, within GFF2625 at 311.970 kb on - strand, within GFF2625 at 311.970 kb on - strand, within GFF2625 at 311.970 kb on - strand, within GFF2625 at 311.970 kb on - strand, within GFF2625 at 311.970 kb on - strand, within GFF2625 at 312.009 kb on + strand, within GFF2625 at 312.009 kb on + strand, within GFF2625 at 312.009 kb on + strand, within GFF2625 at 312.009 kb on + strand, within GFF2625 at 312.010 kb on - strand, within GFF2625 at 312.010 kb on - strand, within GFF2625 at 312.010 kb on - strand, within GFF2625 at 312.015 kb on + strand, within GFF2625 at 312.201 kb on + strand, within GFF2625 at 312.201 kb on + strand, within GFF2625 at 312.203 kb on + strand, within GFF2625 at 312.219 kb on + strand at 312.220 kb on - strand at 312.293 kb on + strand at 312.293 kb on + strand at 312.293 kb on + strand at 312.293 kb on + strand at 312.294 kb on - strand at 312.294 kb on - strand at 312.294 kb on - strand at 312.344 kb on + strand at 312.344 kb on + strand at 312.345 kb on - strand at 312.365 kb on + strand at 312.365 kb on + strand at 312.365 kb on + strand at 312.366 kb on - strand at 312.374 kb on + strand at 312.375 kb on - strand at 312.375 kb on - strand at 312.375 kb on - strand at 312.375 kb on - strand at 312.375 kb on - strand at 312.375 kb on - strand at 312.395 kb on + strand at 312.571 kb on + strand at 312.745 kb on + strand at 312.745 kb on + strand at 312.745 kb on + strand at 312.745 kb on + strand at 312.745 kb on + strand at 312.746 kb on - strand at 312.746 kb on - strand at 312.746 kb on - strand at 312.746 kb on - strand at 312.746 kb on - strand at 312.746 kb on - strand at 312.746 kb on - strand at 312.746 kb on - strand at 313.105 kb on + strand, within GFF2627 at 313.105 kb on + strand, within GFF2627 at 313.105 kb on + strand, within GFF2627 at 313.105 kb on + strand, within GFF2627 at 313.106 kb on - strand, within GFF2627 at 313.166 kb on + strand, within GFF2627 at 313.167 kb on - strand, within GFF2627 at 313.212 kb on + strand, within GFF2627 at 313.212 kb on + strand, within GFF2627 at 313.213 kb on - strand, within GFF2627 at 313.213 kb on - strand, within GFF2627 at 313.231 kb on + strand, within GFF2627 at 313.232 kb on - strand, within GFF2627 at 313.256 kb on - strand, within GFF2627 at 313.256 kb on - strand, within GFF2627 at 313.256 kb on - strand, within GFF2627 at 313.256 kb on - strand, within GFF2627
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 309,570 + -0.3 309,570 + +0.4 309,570 + -0.4 309,571 - +0.1 309,571 - -0.3 309,571 - +0.5 309,571 - -1.0 309,571 - +0.9 309,571 - -0.5 309,571 - -0.5 309,571 - +0.1 309,694 + -0.1 309,694 + -0.4 309,694 + +0.6 309,694 + +0.1 309,694 + -0.0 309,694 + +0.2 309,695 - +0.2 309,769 + -0.7 309,770 - -0.7 309,770 - -0.2 309,789 + -0.1 309,816 + +0.2 309,816 + -0.2 309,817 - -1.5 309,817 - +0.2 309,881 + -0.2 309,881 + -0.5 309,882 - -0.2 309,882 - -0.3 309,882 - -0.2 309,882 - +0.2 309,970 + GFF2624 0.35 -0.1 309,970 + GFF2624 0.35 +0.5 309,970 + GFF2624 0.35 -0.7 309,970 + GFF2624 0.35 -0.8 309,970 + GFF2624 0.35 +0.4 309,970 + GFF2624 0.35 -0.5 309,971 - GFF2624 0.36 +0.0 309,971 - GFF2624 0.36 -0.2 309,971 - GFF2624 0.36 -1.0 309,992 + GFF2624 0.51 -0.3 309,993 - GFF2624 0.52 +0.1 310,011 + GFF2624 0.65 +0.4 310,011 + GFF2624 0.65 +0.0 310,011 + GFF2624 0.65 +0.5 310,011 + GFF2624 0.65 -0.2 310,011 + GFF2624 0.65 -0.3 310,011 + GFF2624 0.65 -0.0 310,012 - GFF2624 0.65 +0.1 310,058 + -0.2 310,109 - +0.2 310,111 - +0.1 310,112 + -0.3 310,113 - -0.3 310,166 + +0.2 310,166 + -0.5 310,167 - +0.7 310,167 - +1.7 310,167 - -0.1 310,208 + +0.4 310,209 - -0.3 310,209 - +0.4 310,209 - +0.1 310,222 - +0.6 310,230 - +0.3 310,351 + -0.2 310,351 + -0.3 310,352 - +0.1 310,369 - -0.4 310,429 - +1.6 310,429 - -0.2 310,487 + +0.2 310,581 - +1.0 310,716 - +0.4 310,716 - -0.8 310,737 - GFF2625 0.10 +0.8 310,812 + GFF2625 0.14 +0.8 310,812 + GFF2625 0.14 -0.6 310,813 - GFF2625 0.15 -0.2 310,813 - GFF2625 0.15 -0.4 310,813 - GFF2625 0.15 -0.4 310,913 + GFF2625 0.20 +0.1 310,914 - GFF2625 0.20 -0.0 310,914 - GFF2625 0.20 +0.1 310,914 - GFF2625 0.20 -0.3 310,966 + GFF2625 0.23 -0.4 310,966 + GFF2625 0.23 -0.4 310,967 - GFF2625 0.23 +0.6 311,127 + GFF2625 0.32 +0.2 311,127 + GFF2625 0.32 -0.2 311,128 - GFF2625 0.32 -0.2 311,128 - GFF2625 0.32 +0.1 311,128 - GFF2625 0.32 -0.1 311,128 - GFF2625 0.32 -0.5 311,128 - GFF2625 0.32 -0.0 311,128 - GFF2625 0.32 +0.2 311,128 - GFF2625 0.32 -1.2 311,229 + GFF2625 0.37 -1.5 311,229 + GFF2625 0.37 -0.4 311,230 - GFF2625 0.37 +0.2 311,230 - GFF2625 0.37 +0.1 311,232 + GFF2625 0.37 +0.1 311,233 - GFF2625 0.37 +0.2 311,233 - GFF2625 0.37 +0.3 311,233 - GFF2625 0.37 -0.2 311,323 + GFF2625 0.42 -0.4 311,323 + GFF2625 0.42 +0.4 311,324 - GFF2625 0.42 +1.5 311,324 - GFF2625 0.42 -0.5 311,356 + GFF2625 0.44 -0.2 311,357 - GFF2625 0.44 +1.9 311,374 - GFF2625 0.45 -0.0 311,388 + GFF2625 0.46 -0.3 311,388 + GFF2625 0.46 +0.9 311,388 + GFF2625 0.46 +0.6 311,388 + GFF2625 0.46 +0.1 311,389 - GFF2625 0.46 +0.3 311,389 - GFF2625 0.46 -0.8 311,389 - GFF2625 0.46 -0.7 311,389 - GFF2625 0.46 -0.5 311,389 - GFF2625 0.46 -0.3 311,389 - GFF2625 0.46 -0.2 311,389 - GFF2625 0.46 +0.5 311,390 + GFF2625 0.46 -0.4 311,390 + GFF2625 0.46 +1.4 311,391 - GFF2625 0.46 +1.7 311,391 - GFF2625 0.46 -0.3 311,661 - GFF2625 0.60 -0.7 311,711 + GFF2625 0.63 -0.9 311,711 + GFF2625 0.63 +0.0 311,711 + GFF2625 0.63 +0.5 311,711 + GFF2625 0.63 -0.0 311,943 + GFF2625 0.76 +0.8 311,944 - GFF2625 0.76 -0.1 311,956 - GFF2625 0.76 -0.6 311,956 - GFF2625 0.76 -0.4 311,967 + GFF2625 0.77 +0.2 311,968 - GFF2625 0.77 +0.8 311,968 - GFF2625 0.77 +1.1 311,968 - GFF2625 0.77 +0.3 311,969 + GFF2625 0.77 +0.7 311,969 + GFF2625 0.77 +0.1 311,969 + GFF2625 0.77 -0.1 311,969 + GFF2625 0.77 +0.4 311,969 + GFF2625 0.77 +0.5 311,969 + GFF2625 0.77 -0.5 311,969 + GFF2625 0.77 -0.8 311,970 - GFF2625 0.77 +0.5 311,970 - GFF2625 0.77 +0.1 311,970 - GFF2625 0.77 -1.2 311,970 - GFF2625 0.77 -0.7 311,970 - GFF2625 0.77 -0.3 311,970 - GFF2625 0.77 +0.1 311,970 - GFF2625 0.77 +0.2 312,009 + GFF2625 0.79 -1.5 312,009 + GFF2625 0.79 -0.6 312,009 + GFF2625 0.79 +0.1 312,009 + GFF2625 0.79 -0.1 312,010 - GFF2625 0.79 +0.5 312,010 - GFF2625 0.79 -0.8 312,010 - GFF2625 0.79 +0.8 312,015 + GFF2625 0.80 +0.1 312,201 + GFF2625 0.90 -0.3 312,201 + GFF2625 0.90 -0.0 312,203 + GFF2625 0.90 +0.5 312,219 + +0.4 312,220 - -0.2 312,293 + -0.3 312,293 + -0.3 312,293 + +0.5 312,293 + +0.4 312,294 - +0.6 312,294 - -0.6 312,294 - +0.5 312,344 + +0.9 312,344 + -0.3 312,345 - -0.3 312,365 + -0.1 312,365 + -1.0 312,365 + -0.0 312,366 - +0.6 312,374 + -0.2 312,375 - +1.0 312,375 - -0.5 312,375 - +0.0 312,375 - -1.4 312,375 - -0.2 312,375 - +0.5 312,395 + +0.4 312,571 + -0.1 312,745 + -0.5 312,745 + +0.2 312,745 + +0.4 312,745 + +0.2 312,745 + -1.8 312,746 - -1.3 312,746 - +0.2 312,746 - -1.1 312,746 - +0.3 312,746 - -0.3 312,746 - -0.9 312,746 - -0.2 312,746 - -0.6 313,105 + GFF2627 0.12 +0.2 313,105 + GFF2627 0.12 -0.1 313,105 + GFF2627 0.12 +0.3 313,105 + GFF2627 0.12 -1.3 313,106 - GFF2627 0.13 +0.3 313,166 + GFF2627 0.28 -0.1 313,167 - GFF2627 0.29 -0.8 313,212 + GFF2627 0.40 -0.2 313,212 + GFF2627 0.40 +0.5 313,213 - GFF2627 0.41 +0.8 313,213 - GFF2627 0.41 -0.1 313,231 + GFF2627 0.45 -1.0 313,232 - GFF2627 0.46 +0.1 313,256 - GFF2627 0.52 +0.2 313,256 - GFF2627 0.52 +0.3 313,256 - GFF2627 0.52 -3.0 313,256 - GFF2627 0.52 -0.6
Or see this region's nucleotide sequence