Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2616 and GFF2617 are separated by 243 nucleotides GFF2617 and GFF2618 are separated by 23 nucleotides
GFF2616 - hypothetical protein, at 297,827 to 298,612
GFF2616
GFF2617 - hypothetical protein, at 298,856 to 300,595
GFF2617
GFF2618 - Conjugal transfer protein TraG, at 300,619 to 302,598
GFF2618
Position (kb) 298
299
300
301 Strain fitness (log2 ratio) -2
-1
0
1 at 298.175 kb on + strand, within GFF2616 at 298.176 kb on - strand, within GFF2616 at 298.232 kb on + strand, within GFF2616 at 298.232 kb on + strand, within GFF2616 at 298.256 kb on + strand, within GFF2616 at 298.283 kb on + strand, within GFF2616 at 298.283 kb on + strand, within GFF2616 at 298.284 kb on - strand, within GFF2616 at 298.284 kb on - strand, within GFF2616 at 298.284 kb on - strand, within GFF2616 at 298.284 kb on - strand, within GFF2616 at 298.284 kb on - strand, within GFF2616 at 298.632 kb on + strand at 298.632 kb on + strand at 298.632 kb on + strand at 298.633 kb on - strand at 298.633 kb on - strand at 298.633 kb on - strand at 298.633 kb on - strand at 298.707 kb on + strand at 298.755 kb on + strand at 298.814 kb on + strand at 298.814 kb on + strand at 298.815 kb on - strand at 298.856 kb on - strand at 299.098 kb on - strand, within GFF2617 at 299.098 kb on - strand, within GFF2617 at 299.098 kb on - strand, within GFF2617 at 299.107 kb on + strand, within GFF2617 at 299.107 kb on + strand, within GFF2617 at 299.108 kb on - strand, within GFF2617 at 299.144 kb on + strand, within GFF2617 at 299.144 kb on + strand, within GFF2617 at 299.144 kb on + strand, within GFF2617 at 299.145 kb on - strand, within GFF2617 at 299.145 kb on - strand, within GFF2617 at 299.164 kb on - strand, within GFF2617 at 299.413 kb on + strand, within GFF2617 at 299.413 kb on + strand, within GFF2617 at 299.413 kb on + strand, within GFF2617 at 299.413 kb on + strand, within GFF2617 at 299.435 kb on + strand, within GFF2617 at 299.468 kb on + strand, within GFF2617 at 299.468 kb on + strand, within GFF2617 at 299.468 kb on + strand, within GFF2617 at 299.468 kb on + strand, within GFF2617 at 299.468 kb on + strand, within GFF2617 at 299.468 kb on + strand, within GFF2617 at 299.469 kb on - strand, within GFF2617 at 299.469 kb on - strand, within GFF2617 at 299.469 kb on - strand, within GFF2617 at 299.469 kb on - strand, within GFF2617 at 299.469 kb on - strand, within GFF2617 at 299.469 kb on - strand, within GFF2617 at 299.864 kb on + strand, within GFF2617 at 299.864 kb on + strand, within GFF2617 at 299.864 kb on + strand, within GFF2617 at 299.865 kb on - strand, within GFF2617 at 299.865 kb on - strand, within GFF2617 at 299.865 kb on - strand, within GFF2617 at 299.896 kb on + strand, within GFF2617 at 299.896 kb on + strand, within GFF2617 at 299.897 kb on - strand, within GFF2617 at 299.952 kb on - strand, within GFF2617 at 300.224 kb on - strand, within GFF2617 at 300.398 kb on + strand, within GFF2617 at 300.398 kb on + strand, within GFF2617 at 300.398 kb on + strand, within GFF2617 at 300.398 kb on + strand, within GFF2617 at 300.398 kb on + strand, within GFF2617 at 300.398 kb on + strand, within GFF2617 at 300.398 kb on + strand, within GFF2617 at 300.398 kb on + strand, within GFF2617 at 300.398 kb on + strand, within GFF2617 at 300.398 kb on + strand, within GFF2617 at 300.399 kb on - strand, within GFF2617 at 300.399 kb on - strand, within GFF2617 at 300.399 kb on - strand, within GFF2617 at 300.399 kb on - strand, within GFF2617 at 300.399 kb on - strand, within GFF2617 at 300.399 kb on - strand, within GFF2617 at 300.399 kb on - strand, within GFF2617 at 300.399 kb on - strand, within GFF2617 at 300.399 kb on - strand, within GFF2617 at 300.399 kb on - strand, within GFF2617 at 300.399 kb on - strand, within GFF2617 at 300.399 kb on - strand, within GFF2617 at 300.413 kb on + strand, within GFF2617 at 300.772 kb on + strand at 300.772 kb on + strand at 300.802 kb on + strand at 300.802 kb on + strand at 300.803 kb on - strand at 300.803 kb on - strand at 300.803 kb on - strand at 300.817 kb on + strand, within GFF2618 at 300.817 kb on + strand, within GFF2618 at 300.818 kb on - strand, within GFF2618 at 300.832 kb on + strand, within GFF2618 at 300.938 kb on - strand, within GFF2618 at 300.938 kb on - strand, within GFF2618 at 300.938 kb on - strand, within GFF2618 at 300.938 kb on - strand, within GFF2618 at 300.938 kb on - strand, within GFF2618 at 301.031 kb on - strand, within GFF2618 at 301.031 kb on - strand, within GFF2618 at 301.243 kb on + strand, within GFF2618 at 301.243 kb on + strand, within GFF2618 at 301.243 kb on + strand, within GFF2618 at 301.244 kb on - strand, within GFF2618 at 301.244 kb on - strand, within GFF2618 at 301.244 kb on - strand, within GFF2618 at 301.402 kb on + strand, within GFF2618 at 301.402 kb on + strand, within GFF2618 at 301.402 kb on + strand, within GFF2618 at 301.402 kb on + strand, within GFF2618 at 301.402 kb on + strand, within GFF2618 at 301.402 kb on + strand, within GFF2618 at 301.403 kb on - strand, within GFF2618 at 301.403 kb on - strand, within GFF2618 at 301.403 kb on - strand, within GFF2618
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 298,175 + GFF2616 0.44 -0.0 298,176 - GFF2616 0.44 +0.8 298,232 + GFF2616 0.52 +0.7 298,232 + GFF2616 0.52 -0.5 298,256 + GFF2616 0.55 +0.6 298,283 + GFF2616 0.58 +0.1 298,283 + GFF2616 0.58 -0.1 298,284 - GFF2616 0.58 +0.1 298,284 - GFF2616 0.58 +0.5 298,284 - GFF2616 0.58 -0.3 298,284 - GFF2616 0.58 +0.6 298,284 - GFF2616 0.58 -0.6 298,632 + +0.3 298,632 + -1.2 298,632 + -0.3 298,633 - +0.5 298,633 - +0.6 298,633 - +0.2 298,633 - +0.3 298,707 + -0.2 298,755 + -0.2 298,814 + -0.1 298,814 + +0.0 298,815 - +0.3 298,856 - -0.1 299,098 - GFF2617 0.14 +0.3 299,098 - GFF2617 0.14 -0.1 299,098 - GFF2617 0.14 -0.5 299,107 + GFF2617 0.14 +0.3 299,107 + GFF2617 0.14 -0.1 299,108 - GFF2617 0.14 -1.0 299,144 + GFF2617 0.17 -0.4 299,144 + GFF2617 0.17 +0.1 299,144 + GFF2617 0.17 -0.4 299,145 - GFF2617 0.17 +0.6 299,145 - GFF2617 0.17 -0.6 299,164 - GFF2617 0.18 -1.2 299,413 + GFF2617 0.32 +0.1 299,413 + GFF2617 0.32 +1.3 299,413 + GFF2617 0.32 +1.3 299,413 + GFF2617 0.32 +0.7 299,435 + GFF2617 0.33 +0.3 299,468 + GFF2617 0.35 +0.2 299,468 + GFF2617 0.35 +0.2 299,468 + GFF2617 0.35 -0.9 299,468 + GFF2617 0.35 -0.7 299,468 + GFF2617 0.35 -0.4 299,468 + GFF2617 0.35 -2.1 299,469 - GFF2617 0.35 +0.7 299,469 - GFF2617 0.35 +0.5 299,469 - GFF2617 0.35 +1.3 299,469 - GFF2617 0.35 +0.0 299,469 - GFF2617 0.35 +0.5 299,469 - GFF2617 0.35 -1.8 299,864 + GFF2617 0.58 +0.2 299,864 + GFF2617 0.58 -0.2 299,864 + GFF2617 0.58 -1.1 299,865 - GFF2617 0.58 +0.1 299,865 - GFF2617 0.58 -0.6 299,865 - GFF2617 0.58 +0.2 299,896 + GFF2617 0.60 +1.5 299,896 + GFF2617 0.60 -0.2 299,897 - GFF2617 0.60 +0.2 299,952 - GFF2617 0.63 -0.8 300,224 - GFF2617 0.79 +0.8 300,398 + GFF2617 0.89 +0.5 300,398 + GFF2617 0.89 +0.3 300,398 + GFF2617 0.89 +0.3 300,398 + GFF2617 0.89 -0.5 300,398 + GFF2617 0.89 +0.5 300,398 + GFF2617 0.89 -0.5 300,398 + GFF2617 0.89 -0.4 300,398 + GFF2617 0.89 +0.3 300,398 + GFF2617 0.89 -0.1 300,398 + GFF2617 0.89 -0.0 300,399 - GFF2617 0.89 -1.0 300,399 - GFF2617 0.89 +1.4 300,399 - GFF2617 0.89 -0.3 300,399 - GFF2617 0.89 +0.1 300,399 - GFF2617 0.89 +0.2 300,399 - GFF2617 0.89 -0.3 300,399 - GFF2617 0.89 +0.2 300,399 - GFF2617 0.89 +0.2 300,399 - GFF2617 0.89 +0.9 300,399 - GFF2617 0.89 +0.4 300,399 - GFF2617 0.89 -0.3 300,399 - GFF2617 0.89 -0.1 300,413 + GFF2617 0.89 +0.1 300,772 + -0.7 300,772 + +0.3 300,802 + -0.4 300,802 + -0.6 300,803 - +1.5 300,803 - -0.4 300,803 - -1.2 300,817 + GFF2618 0.10 +0.4 300,817 + GFF2618 0.10 +0.5 300,818 - GFF2618 0.10 -0.8 300,832 + GFF2618 0.11 -0.9 300,938 - GFF2618 0.16 +0.6 300,938 - GFF2618 0.16 -0.5 300,938 - GFF2618 0.16 -0.5 300,938 - GFF2618 0.16 -0.4 300,938 - GFF2618 0.16 -0.2 301,031 - GFF2618 0.21 +0.2 301,031 - GFF2618 0.21 +0.0 301,243 + GFF2618 0.32 +0.6 301,243 + GFF2618 0.32 +0.3 301,243 + GFF2618 0.32 -1.0 301,244 - GFF2618 0.32 -0.1 301,244 - GFF2618 0.32 +0.3 301,244 - GFF2618 0.32 +1.1 301,402 + GFF2618 0.40 -0.2 301,402 + GFF2618 0.40 +1.0 301,402 + GFF2618 0.40 -0.1 301,402 + GFF2618 0.40 -1.1 301,402 + GFF2618 0.40 -0.2 301,402 + GFF2618 0.40 +0.2 301,403 - GFF2618 0.40 +0.1 301,403 - GFF2618 0.40 -0.0 301,403 - GFF2618 0.40 -0.1
Or see this region's nucleotide sequence