Strain Fitness in Xanthobacter sp. DMC5 around GFF2593

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2591 and GFF2592 are separated by 2 nucleotidesGFF2592 and GFF2593 are separated by 92 nucleotidesGFF2593 and GFF2594 are separated by 56 nucleotides GFF2591 - hypothetical protein, at 273,575 to 274,612 GFF2591 GFF2592 - High-affinity branched-chain amino acid transport system permease protein LivH, at 274,615 to 275,514 GFF2592 GFF2593 - hypothetical protein, at 275,607 to 275,987 GFF2593 GFF2594 - HTH-type transcriptional repressor NanR, at 276,044 to 276,862 GFF2594 Position (kb) 275 276Strain fitness (log2 ratio) -3 -2 -1 0 1at 274.739 kb on + strand, within GFF2592at 274.740 kb on - strand, within GFF2592at 274.740 kb on - strand, within GFF2592at 274.740 kb on - strand, within GFF2592at 274.740 kb on - strand, within GFF2592at 274.844 kb on + strand, within GFF2592at 274.844 kb on + strand, within GFF2592at 274.845 kb on - strand, within GFF2592at 274.845 kb on - strand, within GFF2592at 275.002 kb on + strand, within GFF2592at 275.002 kb on + strand, within GFF2592at 275.002 kb on + strand, within GFF2592at 275.002 kb on + strand, within GFF2592at 275.003 kb on - strand, within GFF2592at 275.003 kb on - strand, within GFF2592at 275.003 kb on - strand, within GFF2592at 275.003 kb on - strand, within GFF2592at 275.088 kb on - strand, within GFF2592at 275.088 kb on - strand, within GFF2592at 275.088 kb on - strand, within GFF2592at 275.096 kb on + strand, within GFF2592at 275.096 kb on + strand, within GFF2592at 275.220 kb on + strand, within GFF2592at 275.220 kb on + strand, within GFF2592at 275.221 kb on - strand, within GFF2592at 275.237 kb on + strand, within GFF2592at 275.237 kb on + strand, within GFF2592at 275.238 kb on - strand, within GFF2592at 275.238 kb on - strand, within GFF2592at 275.238 kb on - strand, within GFF2592at 275.238 kb on - strand, within GFF2592at 275.238 kb on - strand, within GFF2592at 275.254 kb on + strand, within GFF2592at 275.255 kb on - strand, within GFF2592at 275.372 kb on + strand, within GFF2592at 275.372 kb on + strand, within GFF2592at 275.373 kb on - strand, within GFF2592at 275.373 kb on - strand, within GFF2592at 275.373 kb on - strand, within GFF2592at 275.373 kb on - strand, within GFF2592at 275.471 kb on - strandat 275.471 kb on - strandat 275.474 kb on + strandat 275.475 kb on - strandat 275.525 kb on + strandat 275.526 kb on - strandat 275.627 kb on + strandat 275.627 kb on + strandat 275.627 kb on + strandat 275.627 kb on + strandat 275.627 kb on + strandat 275.628 kb on - strandat 275.628 kb on - strandat 275.628 kb on - strandat 275.665 kb on + strand, within GFF2593at 275.665 kb on + strand, within GFF2593at 275.666 kb on - strand, within GFF2593at 275.666 kb on - strand, within GFF2593at 275.666 kb on - strand, within GFF2593at 275.666 kb on - strand, within GFF2593at 275.666 kb on - strand, within GFF2593at 275.666 kb on - strand, within GFF2593at 275.666 kb on - strand, within GFF2593at 275.666 kb on - strand, within GFF2593at 275.849 kb on + strand, within GFF2593at 275.849 kb on + strand, within GFF2593at 275.850 kb on - strand, within GFF2593at 275.850 kb on - strand, within GFF2593at 275.850 kb on - strand, within GFF2593at 275.850 kb on - strand, within GFF2593at 275.850 kb on - strand, within GFF2593at 275.850 kb on - strand, within GFF2593at 275.858 kb on - strand, within GFF2593at 275.938 kb on + strand, within GFF2593at 276.157 kb on + strand, within GFF2594at 276.157 kb on + strand, within GFF2594at 276.157 kb on + strand, within GFF2594at 276.157 kb on + strand, within GFF2594at 276.158 kb on - strand, within GFF2594at 276.158 kb on - strand, within GFF2594at 276.158 kb on - strand, within GFF2594at 276.158 kb on - strand, within GFF2594at 276.158 kb on - strand, within GFF2594at 276.258 kb on + strand, within GFF2594at 276.259 kb on - strand, within GFF2594at 276.288 kb on + strand, within GFF2594at 276.293 kb on + strand, within GFF2594at 276.293 kb on + strand, within GFF2594at 276.445 kb on + strand, within GFF2594at 276.446 kb on - strand, within GFF2594at 276.534 kb on + strand, within GFF2594at 276.535 kb on - strand, within GFF2594at 276.535 kb on - strand, within GFF2594at 276.570 kb on + strand, within GFF2594at 276.570 kb on + strand, within GFF2594at 276.570 kb on + strand, within GFF2594at 276.650 kb on - strand, within GFF2594at 276.650 kb on - strand, within GFF2594at 276.862 kb on + strandat 276.863 kb on - strandat 276.863 kb on - strandat 276.863 kb on - strandat 276.863 kb on - strandat 276.875 kb on + strandat 276.875 kb on + strandat 276.929 kb on + strandat 276.934 kb on + strandat 276.934 kb on + strandat 276.934 kb on + strandat 276.934 kb on + strandat 276.935 kb on - strandat 276.935 kb on - strandat 276.956 kb on + strandat 276.956 kb on + strandat 276.956 kb on + strandat 276.956 kb on + strandat 276.957 kb on - strandat 276.982 kb on + strandat 276.982 kb on + strandat 276.982 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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274,739 + GFF2592 0.14 -0.3
274,740 - GFF2592 0.14 +0.9
274,740 - GFF2592 0.14 +0.2
274,740 - GFF2592 0.14 -0.0
274,740 - GFF2592 0.14 -0.0
274,844 + GFF2592 0.25 +0.3
274,844 + GFF2592 0.25 -1.1
274,845 - GFF2592 0.26 +0.2
274,845 - GFF2592 0.26 +1.0
275,002 + GFF2592 0.43 -0.7
275,002 + GFF2592 0.43 +0.1
275,002 + GFF2592 0.43 +0.4
275,002 + GFF2592 0.43 -0.0
275,003 - GFF2592 0.43 +1.0
275,003 - GFF2592 0.43 -0.3
275,003 - GFF2592 0.43 +0.3
275,003 - GFF2592 0.43 -0.2
275,088 - GFF2592 0.53 +0.2
275,088 - GFF2592 0.53 -0.1
275,088 - GFF2592 0.53 -0.7
275,096 + GFF2592 0.53 +0.2
275,096 + GFF2592 0.53 +0.2
275,220 + GFF2592 0.67 +0.2
275,220 + GFF2592 0.67 +1.0
275,221 - GFF2592 0.67 -0.2
275,237 + GFF2592 0.69 +0.9
275,237 + GFF2592 0.69 +0.1
275,238 - GFF2592 0.69 +1.1
275,238 - GFF2592 0.69 -0.1
275,238 - GFF2592 0.69 -0.2
275,238 - GFF2592 0.69 -1.3
275,238 - GFF2592 0.69 -0.5
275,254 + GFF2592 0.71 +0.6
275,255 - GFF2592 0.71 -0.1
275,372 + GFF2592 0.84 -0.0
275,372 + GFF2592 0.84 -1.2
275,373 - GFF2592 0.84 +1.1
275,373 - GFF2592 0.84 -3.0
275,373 - GFF2592 0.84 -0.2
275,373 - GFF2592 0.84 +0.8
275,471 - +0.0
275,471 - +0.3
275,474 + -0.1
275,475 - +0.4
275,525 + +0.2
275,526 - -0.8
275,627 + +1.1
275,627 + +0.7
275,627 + +0.7
275,627 + -0.4
275,627 + +0.6
275,628 - +0.2
275,628 - +0.1
275,628 - -0.3
275,665 + GFF2593 0.15 -0.4
275,665 + GFF2593 0.15 -0.0
275,666 - GFF2593 0.15 -0.3
275,666 - GFF2593 0.15 -0.4
275,666 - GFF2593 0.15 -0.2
275,666 - GFF2593 0.15 -0.3
275,666 - GFF2593 0.15 +0.5
275,666 - GFF2593 0.15 +0.1
275,666 - GFF2593 0.15 -0.3
275,666 - GFF2593 0.15 +0.9
275,849 + GFF2593 0.64 +0.9
275,849 + GFF2593 0.64 +0.3
275,850 - GFF2593 0.64 +0.9
275,850 - GFF2593 0.64 +0.2
275,850 - GFF2593 0.64 +0.8
275,850 - GFF2593 0.64 +0.5
275,850 - GFF2593 0.64 -0.4
275,850 - GFF2593 0.64 -0.1
275,858 - GFF2593 0.66 +0.4
275,938 + GFF2593 0.87 +1.1
276,157 + GFF2594 0.14 -0.4
276,157 + GFF2594 0.14 +0.6
276,157 + GFF2594 0.14 +0.2
276,157 + GFF2594 0.14 +0.3
276,158 - GFF2594 0.14 -0.8
276,158 - GFF2594 0.14 -1.4
276,158 - GFF2594 0.14 +0.3
276,158 - GFF2594 0.14 -0.7
276,158 - GFF2594 0.14 +0.2
276,258 + GFF2594 0.26 -1.3
276,259 - GFF2594 0.26 +0.3
276,288 + GFF2594 0.30 +0.5
276,293 + GFF2594 0.30 +1.1
276,293 + GFF2594 0.30 +0.6
276,445 + GFF2594 0.49 -0.0
276,446 - GFF2594 0.49 +0.0
276,534 + GFF2594 0.60 +0.3
276,535 - GFF2594 0.60 +0.3
276,535 - GFF2594 0.60 -0.5
276,570 + GFF2594 0.64 -0.7
276,570 + GFF2594 0.64 -0.5
276,570 + GFF2594 0.64 +0.7
276,650 - GFF2594 0.74 -0.3
276,650 - GFF2594 0.74 +0.3
276,862 + -0.4
276,863 - -2.5
276,863 - -0.2
276,863 - -0.4
276,863 - -1.3
276,875 + +0.1
276,875 + +1.1
276,929 + -0.5
276,934 + +0.6
276,934 + -0.3
276,934 + -0.3
276,934 + -0.7
276,935 - -0.1
276,935 - -0.4
276,956 + +0.2
276,956 + +0.1
276,956 + -0.6
276,956 + -0.5
276,957 - +0.2
276,982 + +0.4
276,982 + -0.1
276,982 + +0.2

Or see this region's nucleotide sequence