Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2554 and GFF2555 are separated by 5 nucleotides GFF2555 and GFF2556 are separated by 129 nucleotides
GFF2554 - Uronate isomerase, at 226,845 to 228,257
GFF2554
GFF2555 - HTH-type transcriptional repressor RspR, at 228,263 to 229,033
GFF2555
GFF2556 - Galactarate dehydratase (L-threo-forming), at 229,163 to 230,695
GFF2556
Position (kb) 228
229
230 Strain fitness (log2 ratio) -1
0
1 at 227.486 kb on - strand, within GFF2554 at 227.542 kb on + strand, within GFF2554 at 227.575 kb on + strand, within GFF2554 at 227.678 kb on - strand, within GFF2554 at 227.842 kb on + strand, within GFF2554 at 227.842 kb on + strand, within GFF2554 at 227.843 kb on - strand, within GFF2554 at 227.843 kb on - strand, within GFF2554 at 227.843 kb on - strand, within GFF2554 at 227.947 kb on + strand, within GFF2554 at 227.947 kb on + strand, within GFF2554 at 227.947 kb on + strand, within GFF2554 at 227.947 kb on + strand, within GFF2554 at 227.948 kb on - strand, within GFF2554 at 227.948 kb on - strand, within GFF2554 at 227.948 kb on - strand, within GFF2554 at 227.948 kb on - strand, within GFF2554 at 227.948 kb on - strand, within GFF2554 at 227.948 kb on - strand, within GFF2554 at 227.948 kb on - strand, within GFF2554 at 227.948 kb on - strand, within GFF2554 at 227.948 kb on - strand, within GFF2554 at 228.049 kb on + strand, within GFF2554 at 228.050 kb on - strand, within GFF2554 at 228.067 kb on + strand, within GFF2554 at 228.067 kb on + strand, within GFF2554 at 228.067 kb on + strand, within GFF2554 at 228.068 kb on - strand, within GFF2554 at 228.068 kb on - strand, within GFF2554 at 228.068 kb on - strand, within GFF2554 at 228.068 kb on - strand, within GFF2554 at 228.124 kb on + strand at 228.185 kb on - strand at 228.310 kb on - strand at 228.761 kb on + strand, within GFF2555 at 228.789 kb on + strand, within GFF2555 at 228.789 kb on + strand, within GFF2555 at 228.789 kb on + strand, within GFF2555 at 228.789 kb on + strand, within GFF2555 at 228.790 kb on - strand, within GFF2555 at 228.790 kb on - strand, within GFF2555 at 228.867 kb on + strand, within GFF2555 at 228.867 kb on + strand, within GFF2555 at 229.141 kb on + strand at 229.141 kb on + strand at 229.439 kb on + strand, within GFF2556 at 229.440 kb on - strand, within GFF2556 at 229.440 kb on - strand, within GFF2556 at 229.440 kb on - strand, within GFF2556 at 229.545 kb on - strand, within GFF2556 at 229.545 kb on - strand, within GFF2556 at 229.706 kb on + strand, within GFF2556 at 229.706 kb on + strand, within GFF2556 at 229.707 kb on - strand, within GFF2556 at 229.707 kb on - strand, within GFF2556 at 229.707 kb on - strand, within GFF2556 at 229.707 kb on - strand, within GFF2556 at 229.707 kb on - strand, within GFF2556 at 229.737 kb on - strand, within GFF2556 at 229.737 kb on - strand, within GFF2556 at 229.737 kb on - strand, within GFF2556 at 229.737 kb on - strand, within GFF2556 at 229.737 kb on - strand, within GFF2556 at 229.820 kb on + strand, within GFF2556 at 229.820 kb on + strand, within GFF2556 at 229.821 kb on - strand, within GFF2556 at 229.903 kb on - strand, within GFF2556 at 229.903 kb on - strand, within GFF2556 at 229.903 kb on - strand, within GFF2556 at 229.903 kb on - strand, within GFF2556 at 229.903 kb on - strand, within GFF2556 at 229.903 kb on - strand, within GFF2556 at 229.906 kb on + strand, within GFF2556
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 227,486 - GFF2554 0.45 -1.5 227,542 + GFF2554 0.49 -0.1 227,575 + GFF2554 0.52 -0.2 227,678 - GFF2554 0.59 -0.2 227,842 + GFF2554 0.71 +0.1 227,842 + GFF2554 0.71 -0.5 227,843 - GFF2554 0.71 -0.0 227,843 - GFF2554 0.71 +0.4 227,843 - GFF2554 0.71 -0.6 227,947 + GFF2554 0.78 +0.2 227,947 + GFF2554 0.78 +0.0 227,947 + GFF2554 0.78 +0.1 227,947 + GFF2554 0.78 +0.5 227,948 - GFF2554 0.78 +0.2 227,948 - GFF2554 0.78 +0.2 227,948 - GFF2554 0.78 -1.2 227,948 - GFF2554 0.78 +0.1 227,948 - GFF2554 0.78 +0.2 227,948 - GFF2554 0.78 -0.4 227,948 - GFF2554 0.78 -1.3 227,948 - GFF2554 0.78 -1.3 227,948 - GFF2554 0.78 +0.0 228,049 + GFF2554 0.85 +0.1 228,050 - GFF2554 0.85 -1.5 228,067 + GFF2554 0.86 -0.9 228,067 + GFF2554 0.86 +0.1 228,067 + GFF2554 0.86 +0.1 228,068 - GFF2554 0.87 -0.3 228,068 - GFF2554 0.87 -0.5 228,068 - GFF2554 0.87 -0.4 228,068 - GFF2554 0.87 -0.6 228,124 + +0.3 228,185 - +0.3 228,310 - -1.1 228,761 + GFF2555 0.65 -0.1 228,789 + GFF2555 0.68 +0.3 228,789 + GFF2555 0.68 +0.4 228,789 + GFF2555 0.68 +0.3 228,789 + GFF2555 0.68 +1.2 228,790 - GFF2555 0.68 +0.6 228,790 - GFF2555 0.68 +0.3 228,867 + GFF2555 0.78 +0.1 228,867 + GFF2555 0.78 -0.1 229,141 + +0.1 229,141 + +0.5 229,439 + GFF2556 0.18 -1.3 229,440 - GFF2556 0.18 +1.0 229,440 - GFF2556 0.18 +1.0 229,440 - GFF2556 0.18 +0.1 229,545 - GFF2556 0.25 -0.2 229,545 - GFF2556 0.25 +0.2 229,706 + GFF2556 0.35 +0.1 229,706 + GFF2556 0.35 -0.0 229,707 - GFF2556 0.35 -0.3 229,707 - GFF2556 0.35 +0.5 229,707 - GFF2556 0.35 -0.5 229,707 - GFF2556 0.35 -0.0 229,707 - GFF2556 0.35 -1.1 229,737 - GFF2556 0.37 -0.5 229,737 - GFF2556 0.37 -0.4 229,737 - GFF2556 0.37 +0.0 229,737 - GFF2556 0.37 +0.2 229,737 - GFF2556 0.37 +0.2 229,820 + GFF2556 0.43 -0.0 229,820 + GFF2556 0.43 -0.7 229,821 - GFF2556 0.43 +0.5 229,903 - GFF2556 0.48 -0.1 229,903 - GFF2556 0.48 -0.6 229,903 - GFF2556 0.48 -0.6 229,903 - GFF2556 0.48 +0.4 229,903 - GFF2556 0.48 +0.5 229,903 - GFF2556 0.48 +0.2 229,906 + GFF2556 0.48 +0.1
Or see this region's nucleotide sequence