Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2546 and GFF2547 are separated by 137 nucleotides GFF2547 and GFF2548 are separated by 358 nucleotides
GFF2546 - hypothetical protein, at 217,839 to 218,636
GFF2546
GFF2547 - 2-ketogluconate reductase, at 218,774 to 219,730
GFF2547
GFF2548 - Diacetylchitobiose uptake system ATP-binding protein MsiK, at 220,089 to 221,162
GFF2548
Position (kb) 218
219
220 Strain fitness (log2 ratio) -2
-1
0
1 at 218.173 kb on + strand, within GFF2546 at 218.204 kb on - strand, within GFF2546 at 218.695 kb on - strand at 218.695 kb on - strand at 218.695 kb on - strand at 219.180 kb on + strand, within GFF2547 at 219.189 kb on + strand, within GFF2547 at 219.190 kb on - strand, within GFF2547 at 219.222 kb on + strand, within GFF2547 at 219.223 kb on - strand, within GFF2547 at 219.223 kb on - strand, within GFF2547 at 219.330 kb on + strand, within GFF2547 at 219.504 kb on + strand, within GFF2547 at 219.505 kb on - strand, within GFF2547 at 219.789 kb on - strand at 219.789 kb on - strand at 219.871 kb on - strand at 219.876 kb on + strand at 219.876 kb on + strand at 219.877 kb on - strand at 220.125 kb on + strand at 220.126 kb on - strand at 220.126 kb on - strand at 220.338 kb on + strand, within GFF2548 at 220.338 kb on + strand, within GFF2548 at 220.339 kb on - strand, within GFF2548 at 220.373 kb on + strand, within GFF2548 at 220.373 kb on + strand, within GFF2548 at 220.374 kb on - strand, within GFF2548 at 220.374 kb on - strand, within GFF2548 at 220.374 kb on - strand, within GFF2548 at 220.653 kb on + strand, within GFF2548 at 220.654 kb on - strand, within GFF2548
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 218,173 + GFF2546 0.42 -1.1 218,204 - GFF2546 0.46 -0.6 218,695 - -0.4 218,695 - -1.1 218,695 - +0.2 219,180 + GFF2547 0.42 +0.2 219,189 + GFF2547 0.43 -0.2 219,190 - GFF2547 0.43 -1.3 219,222 + GFF2547 0.47 -0.3 219,223 - GFF2547 0.47 +1.2 219,223 - GFF2547 0.47 -1.2 219,330 + GFF2547 0.58 +0.7 219,504 + GFF2547 0.76 -0.0 219,505 - GFF2547 0.76 -0.2 219,789 - +0.8 219,789 - -0.3 219,871 - -2.2 219,876 + +0.1 219,876 + -0.3 219,877 - +0.3 220,125 + +0.5 220,126 - +0.7 220,126 - +0.7 220,338 + GFF2548 0.23 +1.2 220,338 + GFF2548 0.23 +1.3 220,339 - GFF2548 0.23 -1.7 220,373 + GFF2548 0.26 +0.6 220,373 + GFF2548 0.26 -0.3 220,374 - GFF2548 0.27 -0.5 220,374 - GFF2548 0.27 -0.9 220,374 - GFF2548 0.27 -0.4 220,653 + GFF2548 0.53 -0.4 220,654 - GFF2548 0.53 +0.8
Or see this region's nucleotide sequence