Strain Fitness in Xanthobacter sp. DMC5 around GFF2539

Experiment: Methanol and casaminos (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2538 and GFF2539 overlap by 1 nucleotidesGFF2539 and GFF2540 are separated by 214 nucleotides GFF2538 - Succinate--CoA ligase [ADP-forming] subunit beta, at 208,622 to 209,824 GFF2538 GFF2539 - Succinate--CoA ligase [ADP-forming] subunit alpha, at 209,824 to 210,708 GFF2539 GFF2540 - putative protein YisK, at 210,923 to 211,696 GFF2540 Position (kb) 209 210 211Strain fitness (log2 ratio) -2 -1 0 1at 208.840 kb on + strand, within GFF2538at 208.840 kb on + strand, within GFF2538at 208.841 kb on - strand, within GFF2538at 208.940 kb on + strand, within GFF2538at 208.940 kb on + strand, within GFF2538at 208.941 kb on - strand, within GFF2538at 209.204 kb on + strand, within GFF2538at 209.204 kb on + strand, within GFF2538at 209.204 kb on + strand, within GFF2538at 209.205 kb on - strand, within GFF2538at 209.205 kb on - strand, within GFF2538at 209.205 kb on - strand, within GFF2538at 209.205 kb on - strand, within GFF2538at 209.205 kb on - strand, within GFF2538at 209.205 kb on - strand, within GFF2538at 209.394 kb on - strand, within GFF2538at 209.394 kb on - strand, within GFF2538at 209.394 kb on - strand, within GFF2538at 209.405 kb on + strand, within GFF2538at 209.405 kb on + strand, within GFF2538at 209.405 kb on + strand, within GFF2538at 209.405 kb on + strand, within GFF2538at 209.406 kb on - strand, within GFF2538at 209.406 kb on - strand, within GFF2538at 209.406 kb on - strand, within GFF2538at 209.406 kb on - strand, within GFF2538at 209.406 kb on - strand, within GFF2538at 209.406 kb on - strand, within GFF2538at 209.406 kb on - strand, within GFF2538at 209.406 kb on - strand, within GFF2538at 209.408 kb on - strand, within GFF2538at 209.486 kb on + strand, within GFF2538at 209.709 kb on - strandat 209.914 kb on + strand, within GFF2539at 209.914 kb on + strand, within GFF2539at 209.914 kb on + strand, within GFF2539at 209.914 kb on + strand, within GFF2539at 209.914 kb on + strand, within GFF2539at 209.914 kb on + strand, within GFF2539at 209.914 kb on + strand, within GFF2539at 209.914 kb on + strand, within GFF2539at 209.915 kb on - strand, within GFF2539at 209.915 kb on - strand, within GFF2539at 209.915 kb on - strand, within GFF2539at 210.037 kb on + strand, within GFF2539at 210.037 kb on + strand, within GFF2539at 210.037 kb on + strand, within GFF2539at 210.037 kb on + strand, within GFF2539at 210.037 kb on + strand, within GFF2539at 210.038 kb on - strand, within GFF2539at 210.038 kb on - strand, within GFF2539at 210.038 kb on - strand, within GFF2539at 210.298 kb on + strand, within GFF2539at 210.298 kb on + strand, within GFF2539at 210.298 kb on + strand, within GFF2539at 210.298 kb on + strand, within GFF2539at 210.298 kb on + strand, within GFF2539at 210.298 kb on + strand, within GFF2539at 210.865 kb on + strandat 210.866 kb on - strandat 210.866 kb on - strandat 210.866 kb on - strandat 211.164 kb on - strand, within GFF2540at 211.164 kb on - strand, within GFF2540at 211.164 kb on - strand, within GFF2540at 211.164 kb on - strand, within GFF2540at 211.164 kb on - strand, within GFF2540at 211.226 kb on + strand, within GFF2540at 211.226 kb on + strand, within GFF2540at 211.226 kb on + strand, within GFF2540at 211.226 kb on + strand, within GFF2540at 211.227 kb on - strand, within GFF2540at 211.227 kb on - strand, within GFF2540at 211.227 kb on - strand, within GFF2540at 211.244 kb on + strand, within GFF2540at 211.244 kb on + strand, within GFF2540at 211.244 kb on + strand, within GFF2540at 211.244 kb on + strand, within GFF2540at 211.245 kb on - strand, within GFF2540at 211.245 kb on - strand, within GFF2540at 211.245 kb on - strand, within GFF2540at 211.245 kb on - strand, within GFF2540at 211.415 kb on + strand, within GFF2540at 211.415 kb on + strand, within GFF2540at 211.416 kb on - strand, within GFF2540at 211.505 kb on + strand, within GFF2540at 211.506 kb on - strand, within GFF2540at 211.681 kb on + strandat 211.682 kb on - strandat 211.682 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
remove
208,840 + GFF2538 0.18 -0.1
208,840 + GFF2538 0.18 +0.7
208,841 - GFF2538 0.18 -0.2
208,940 + GFF2538 0.26 -0.0
208,940 + GFF2538 0.26 -0.4
208,941 - GFF2538 0.27 -0.6
209,204 + GFF2538 0.48 +0.2
209,204 + GFF2538 0.48 +0.2
209,204 + GFF2538 0.48 +0.5
209,205 - GFF2538 0.48 +0.1
209,205 - GFF2538 0.48 +0.5
209,205 - GFF2538 0.48 -0.5
209,205 - GFF2538 0.48 -0.5
209,205 - GFF2538 0.48 +0.2
209,205 - GFF2538 0.48 -0.4
209,394 - GFF2538 0.64 -0.5
209,394 - GFF2538 0.64 +1.0
209,394 - GFF2538 0.64 +1.5
209,405 + GFF2538 0.65 +0.1
209,405 + GFF2538 0.65 +0.0
209,405 + GFF2538 0.65 +1.0
209,405 + GFF2538 0.65 +1.1
209,406 - GFF2538 0.65 +0.3
209,406 - GFF2538 0.65 -0.1
209,406 - GFF2538 0.65 -0.5
209,406 - GFF2538 0.65 +0.1
209,406 - GFF2538 0.65 -0.4
209,406 - GFF2538 0.65 -0.0
209,406 - GFF2538 0.65 -0.2
209,406 - GFF2538 0.65 -0.7
209,408 - GFF2538 0.65 -0.4
209,486 + GFF2538 0.72 -0.4
209,709 - -0.7
209,914 + GFF2539 0.10 +0.6
209,914 + GFF2539 0.10 -0.1
209,914 + GFF2539 0.10 +0.1
209,914 + GFF2539 0.10 +0.6
209,914 + GFF2539 0.10 -0.1
209,914 + GFF2539 0.10 -1.0
209,914 + GFF2539 0.10 -0.7
209,914 + GFF2539 0.10 +0.9
209,915 - GFF2539 0.10 +0.1
209,915 - GFF2539 0.10 -1.5
209,915 - GFF2539 0.10 +0.4
210,037 + GFF2539 0.24 +0.1
210,037 + GFF2539 0.24 +0.6
210,037 + GFF2539 0.24 -0.1
210,037 + GFF2539 0.24 +0.1
210,037 + GFF2539 0.24 +0.3
210,038 - GFF2539 0.24 -0.1
210,038 - GFF2539 0.24 -0.3
210,038 - GFF2539 0.24 +0.6
210,298 + GFF2539 0.54 -0.5
210,298 + GFF2539 0.54 -1.1
210,298 + GFF2539 0.54 -0.3
210,298 + GFF2539 0.54 -1.1
210,298 + GFF2539 0.54 -0.8
210,298 + GFF2539 0.54 -0.8
210,865 + -0.4
210,866 - -0.9
210,866 - +0.3
210,866 - -0.6
211,164 - GFF2540 0.31 +0.1
211,164 - GFF2540 0.31 +0.6
211,164 - GFF2540 0.31 -0.5
211,164 - GFF2540 0.31 +0.3
211,164 - GFF2540 0.31 +0.1
211,226 + GFF2540 0.39 +0.1
211,226 + GFF2540 0.39 -0.0
211,226 + GFF2540 0.39 +0.8
211,226 + GFF2540 0.39 +0.1
211,227 - GFF2540 0.39 +0.2
211,227 - GFF2540 0.39 +0.9
211,227 - GFF2540 0.39 -0.8
211,244 + GFF2540 0.41 +0.3
211,244 + GFF2540 0.41 -2.1
211,244 + GFF2540 0.41 +0.2
211,244 + GFF2540 0.41 +1.0
211,245 - GFF2540 0.42 +0.0
211,245 - GFF2540 0.42 +1.2
211,245 - GFF2540 0.42 +0.4
211,245 - GFF2540 0.42 +0.1
211,415 + GFF2540 0.64 +0.0
211,415 + GFF2540 0.64 +0.1
211,416 - GFF2540 0.64 +0.4
211,505 + GFF2540 0.75 +0.2
211,506 - GFF2540 0.75 -0.1
211,681 + -0.3
211,682 - +0.0
211,682 - -1.9

Or see this region's nucleotide sequence