Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2524 and GFF2525 are separated by 636 nucleotides GFF2525 and GFF2526 are separated by 15 nucleotides
GFF2524 - Ferredoxin-dependent glutamate synthase 1, at 188,478 to 193,181
GFF2524
GFF2525 - hypothetical protein, at 193,818 to 194,684
GFF2525
GFF2526 - hypothetical protein, at 194,700 to 195,281
GFF2526
Position (kb) 193
194
195 Strain fitness (log2 ratio) -1
0
1 at 193.454 kb on + strand at 193.485 kb on - strand at 193.687 kb on + strand at 193.687 kb on + strand at 193.688 kb on - strand at 193.688 kb on - strand at 193.688 kb on - strand at 193.688 kb on - strand at 193.688 kb on - strand at 193.688 kb on - strand at 193.725 kb on + strand at 193.726 kb on - strand at 193.753 kb on + strand at 193.754 kb on - strand at 193.798 kb on + strand at 193.798 kb on + strand at 193.799 kb on - strand at 193.929 kb on + strand, within GFF2525 at 193.929 kb on + strand, within GFF2525 at 193.929 kb on + strand, within GFF2525 at 193.930 kb on - strand, within GFF2525 at 193.930 kb on - strand, within GFF2525 at 194.014 kb on - strand, within GFF2525 at 194.085 kb on + strand, within GFF2525 at 194.124 kb on + strand, within GFF2525 at 194.124 kb on + strand, within GFF2525 at 194.125 kb on - strand, within GFF2525 at 194.125 kb on - strand, within GFF2525 at 194.125 kb on - strand, within GFF2525 at 194.307 kb on + strand, within GFF2525 at 194.308 kb on - strand, within GFF2525 at 194.308 kb on - strand, within GFF2525 at 194.308 kb on - strand, within GFF2525 at 194.682 kb on + strand at 194.682 kb on + strand at 194.682 kb on + strand at 194.710 kb on + strand at 194.810 kb on - strand, within GFF2526 at 194.810 kb on - strand, within GFF2526 at 194.810 kb on - strand, within GFF2526 at 194.887 kb on + strand, within GFF2526 at 194.977 kb on + strand, within GFF2526 at 195.011 kb on - strand, within GFF2526 at 195.016 kb on + strand, within GFF2526 at 195.017 kb on - strand, within GFF2526 at 195.017 kb on - strand, within GFF2526 at 195.049 kb on + strand, within GFF2526 at 195.049 kb on + strand, within GFF2526 at 195.049 kb on + strand, within GFF2526 at 195.049 kb on + strand, within GFF2526 at 195.050 kb on - strand, within GFF2526 at 195.050 kb on - strand, within GFF2526 at 195.050 kb on - strand, within GFF2526 at 195.070 kb on + strand, within GFF2526 at 195.118 kb on + strand, within GFF2526 at 195.119 kb on - strand, within GFF2526 at 195.248 kb on - strand at 195.265 kb on + strand at 195.266 kb on - strand at 195.266 kb on - strand at 195.318 kb on + strand at 195.421 kb on - strand at 195.452 kb on + strand at 195.453 kb on - strand at 195.466 kb on - strand at 195.466 kb on - strand at 195.530 kb on + strand at 195.645 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 193,454 + +0.5 193,485 - -1.0 193,687 + +0.8 193,687 + -0.4 193,688 - +0.3 193,688 - -0.6 193,688 - +0.8 193,688 - -0.2 193,688 - -0.0 193,688 - -1.4 193,725 + +0.3 193,726 - +0.3 193,753 + +0.0 193,754 - -1.2 193,798 + +0.3 193,798 + +0.3 193,799 - -0.3 193,929 + GFF2525 0.13 +0.4 193,929 + GFF2525 0.13 +1.7 193,929 + GFF2525 0.13 +0.1 193,930 - GFF2525 0.13 -0.1 193,930 - GFF2525 0.13 -0.5 194,014 - GFF2525 0.23 -0.3 194,085 + GFF2525 0.31 +0.5 194,124 + GFF2525 0.35 -0.3 194,124 + GFF2525 0.35 -0.1 194,125 - GFF2525 0.35 -0.5 194,125 - GFF2525 0.35 +0.3 194,125 - GFF2525 0.35 +0.1 194,307 + GFF2525 0.56 +1.6 194,308 - GFF2525 0.57 +0.3 194,308 - GFF2525 0.57 -0.4 194,308 - GFF2525 0.57 +0.6 194,682 + -0.2 194,682 + +0.4 194,682 + +0.1 194,710 + -0.1 194,810 - GFF2526 0.19 +0.6 194,810 - GFF2526 0.19 -0.1 194,810 - GFF2526 0.19 -1.2 194,887 + GFF2526 0.32 -0.5 194,977 + GFF2526 0.48 +1.5 195,011 - GFF2526 0.53 +0.6 195,016 + GFF2526 0.54 -0.4 195,017 - GFF2526 0.54 +0.3 195,017 - GFF2526 0.54 +1.5 195,049 + GFF2526 0.60 +0.1 195,049 + GFF2526 0.60 -0.3 195,049 + GFF2526 0.60 +0.3 195,049 + GFF2526 0.60 -0.4 195,050 - GFF2526 0.60 +0.7 195,050 - GFF2526 0.60 -0.8 195,050 - GFF2526 0.60 -0.1 195,070 + GFF2526 0.64 +0.5 195,118 + GFF2526 0.72 +0.4 195,119 - GFF2526 0.72 +0.0 195,248 - +0.3 195,265 + -0.5 195,266 - -0.5 195,266 - -0.7 195,318 + +0.0 195,421 - -0.3 195,452 + -0.5 195,453 - -0.2 195,466 - +0.8 195,466 - -1.0 195,530 + +0.6 195,645 - -0.0
Or see this region's nucleotide sequence