Strain Fitness in Xanthobacter sp. DMC5 around GFF2479

Experiment: Methanol and casaminos (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Methanol and casaminos (C)
137,159	+		GFF2478	0.59	-0.6
137,159	+		GFF2478	0.59	+0.2
137,160	-		GFF2478	0.59	+0.1
137,160	-		GFF2478	0.59	-0.8
137,186	+		GFF2478	0.62	-0.1
137,186	+		GFF2478	0.62	+0.5
137,186	+		GFF2478	0.62	+0.1
137,300	+		GFF2478	0.72	-0.4
137,301	-		GFF2478	0.72	-0.3
137,301	-		GFF2478	0.72	-0.2
137,313	+		GFF2478	0.74	-0.2
137,313	+		GFF2478	0.74	-0.8
137,314	-		GFF2478	0.74	+0.3
137,314	-		GFF2478	0.74	+0.5
137,314	-		GFF2478	0.74	+0.1
137,314	-		GFF2478	0.74	+0.3
137,321	+		GFF2478	0.74	+0.5
137,321	+		GFF2478	0.74	-0.7
137,322	-		GFF2478	0.74	-0.5
137,322	-		GFF2478	0.74	+0.0
137,443	-		GFF2478	0.86	+0.5
137,450	+		GFF2478	0.87	+0.2
137,504	+				+0.7
137,504	+				-0.9
137,505	-				+0.3
137,505	-				-0.3
137,593	-				-1.0
137,593	-				+0.2
137,632	+				+0.2
137,633	-				+0.0
137,633	-				-2.1
137,636	+				+1.6
137,636	+				-0.3
137,636	+				-0.1
137,637	-				+0.7
137,637	-				-0.1
137,637	-				-0.7
137,637	-				-0.1
137,654	-				-0.0
137,667	+				-1.5
137,668	-				-1.6
137,668	-				-0.1
137,668	-				-0.7
137,723	+				+0.2
137,724	-				+0.3
137,724	-				-1.3
137,799	+				-1.2
137,799	+				-0.5
137,800	-				+0.1
137,800	-				-0.6
137,890	-				-1.9
138,115	-				-0.5
138,187	+				+1.0
138,450	+		GFF2479	0.20	+0.2
138,450	+		GFF2479	0.20	-0.1
138,601	+		GFF2479	0.29	-0.3
138,601	+		GFF2479	0.29	+0.7
138,601	+		GFF2479	0.29	-1.1
138,601	+		GFF2479	0.29	+0.2
138,602	-		GFF2479	0.30	+0.1
138,602	-		GFF2479	0.30	+0.2
138,602	-		GFF2479	0.30	+1.1
138,602	-		GFF2479	0.30	-0.7
138,602	-		GFF2479	0.30	+0.8
138,602	-		GFF2479	0.30	+0.8
138,602	-		GFF2479	0.30	+0.3
138,853	+		GFF2479	0.45	+0.2
138,853	+		GFF2479	0.45	+1.4
138,853	+		GFF2479	0.45	+0.2
138,853	+		GFF2479	0.45	+0.1
138,853	+		GFF2479	0.45	-1.9
138,853	+		GFF2479	0.45	-0.2
138,853	+		GFF2479	0.45	+0.5
138,853	+		GFF2479	0.45	+0.1
138,853	+		GFF2479	0.45	-0.3
138,853	+		GFF2479	0.45	-0.9
138,854	-		GFF2479	0.45	-0.1
138,854	-		GFF2479	0.45	-0.1
138,854	-		GFF2479	0.45	+0.1
138,854	-		GFF2479	0.45	+0.1
138,854	-		GFF2479	0.45	+0.8
138,854	-		GFF2479	0.45	+0.3
138,869	-		GFF2479	0.46	-0.3
138,869	-		GFF2479	0.46	-0.4
138,925	+		GFF2479	0.49	+0.0
138,925	+		GFF2479	0.49	-0.1
138,926	-		GFF2479	0.49	-0.2
138,946	+		GFF2479	0.50	-0.5
138,947	-		GFF2479	0.50	-0.6
139,075	+		GFF2479	0.58	-0.3
139,075	+		GFF2479	0.58	+0.1
139,076	-		GFF2479	0.58	+0.1
139,138	+		GFF2479	0.62	-0.7
139,138	+		GFF2479	0.62	+0.9
139,138	+		GFF2479	0.62	+0.5
139,138	+		GFF2479	0.62	+0.5
139,138	+		GFF2479	0.62	-0.1
139,138	+		GFF2479	0.62	-1.2
139,138	+		GFF2479	0.62	+1.2
139,138	+		GFF2479	0.62	+0.0
139,138	+		GFF2479	0.62	+0.5
139,139	-		GFF2479	0.62	+0.5
139,139	-		GFF2479	0.62	+0.5
139,228	+		GFF2479	0.67	-0.1
139,228	+		GFF2479	0.67	-0.1
139,228	+		GFF2479	0.67	+1.0
139,228	+		GFF2479	0.67	-0.7
139,228	+		GFF2479	0.67	+0.8
139,229	-		GFF2479	0.67	+0.9
139,237	+		GFF2479	0.68	+1.7
139,237	+		GFF2479	0.68	+1.2
139,291	+		GFF2479	0.71	-0.3
139,292	-		GFF2479	0.71	+0.1
139,292	-		GFF2479	0.71	+0.2
139,292	-		GFF2479	0.71	+0.2
139,292	-		GFF2479	0.71	+0.5
139,399	+		GFF2479	0.77	-0.1
139,399	+		GFF2479	0.77	+0.3
139,400	-		GFF2479	0.77	+0.5
139,516	+		GFF2479	0.84	-0.1
139,516	+		GFF2479	0.84	+0.0
139,517	-		GFF2479	0.84	-1.1
139,517	-		GFF2479	0.84	+1.5
139,534	+		GFF2479	0.85	-0.3
139,535	-		GFF2479	0.85	+1.6
139,535	-		GFF2479	0.85	+0.3
139,566	+		GFF2479	0.87	-1.0
139,566	+		GFF2479	0.87	-1.0
139,654	+				+0.0
139,655	-				+0.2
139,917	+				+0.6
139,917	+				-0.3
139,918	-				+0.0
139,918	-				+0.6
139,918	-				-1.2
139,918	-				-0.3
139,918	-				+0.1
139,919	+				-0.2
139,919	+				+0.1
139,919	+				-0.3
139,919	+				-0.1
139,919	+				+0.0
139,919	+				+0.6
139,919	+				+0.1
139,920	-				+0.3
139,920	-				+0.5
139,920	-				-0.4
139,920	-				-0.0
139,920	-				+0.5
139,920	-				-1.1
139,920	-				-0.5
139,920	-				+0.6
139,973	+		GFF2480	0.14	+0.5
139,997	+		GFF2480	0.15	-0.8
139,998	-		GFF2480	0.15	+0.6
139,998	-		GFF2480	0.15	-0.2
139,998	-		GFF2480	0.15	-0.5
139,998	-		GFF2480	0.15	-0.5
140,003	-		GFF2480	0.16	-1.4
140,006	+		GFF2480	0.16	+0.0
140,006	+		GFF2480	0.16	+0.2
140,006	+		GFF2480	0.16	-0.3
140,006	+		GFF2480	0.16	+0.0
140,006	+		GFF2480	0.16	-0.3
140,007	-		GFF2480	0.16	-0.2
140,007	-		GFF2480	0.16	-0.1
140,007	-		GFF2480	0.16	-0.8
140,117	+		GFF2480	0.24	-0.6
140,118	-		GFF2480	0.24	-0.6
140,156	+		GFF2480	0.27	+0.6
140,156	+		GFF2480	0.27	+0.3
140,156	+		GFF2480	0.27	-0.5
140,157	-		GFF2480	0.27	-1.3
140,157	-		GFF2480	0.27	-0.2
140,157	-		GFF2480	0.27	-1.3
140,471	+		GFF2480	0.49	-0.2
140,471	+		GFF2480	0.49	-0.2
140,471	+		GFF2480	0.49	+0.2
140,471	+		GFF2480	0.49	+0.2
140,472	-		GFF2480	0.49	-0.1
140,472	-		GFF2480	0.49	-0.5
140,555	+		GFF2480	0.55	-0.1
140,591	+		GFF2480	0.57	+0.1
140,591	+		GFF2480	0.57	-0.0
140,591	+		GFF2480	0.57	+0.5
140,591	+		GFF2480	0.57	-0.4
140,591	+		GFF2480	0.57	-0.3
140,591	+		GFF2480	0.57	-0.2
140,591	+		GFF2480	0.57	-0.2
140,592	-		GFF2480	0.57	+0.0
140,592	-		GFF2480	0.57	+0.6
140,592	-		GFF2480	0.57	+0.0
140,592	-		GFF2480	0.57	-1.3
140,592	-		GFF2480	0.57	-0.6
140,592	-		GFF2480	0.57	-0.2
140,592	-		GFF2480	0.57	+0.2
140,592	-		GFF2480	0.57	+1.6
140,654	+		GFF2480	0.62	+0.4
140,654	+		GFF2480	0.62	+0.4
140,654	+		GFF2480	0.62	-0.3
140,654	+		GFF2480	0.62	-0.1
140,699	+		GFF2480	0.65	+1.0
140,699	+		GFF2480	0.65	+0.1
140,699	+		GFF2480	0.65	-0.2
140,700	-		GFF2480	0.65	-1.3
140,700	-		GFF2480	0.65	-0.6
140,700	-		GFF2480	0.65	-1.3
140,700	-		GFF2480	0.65	-0.4
140,700	-		GFF2480	0.65	+0.4
140,700	-		GFF2480	0.65	-0.3