Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2477 and GFF2478 are separated by 112 nucleotides GFF2478 and GFF2479 are separated by 519 nucleotides
GFF2477 - Histidine biosynthesis bifunctional protein HisB, at 135,204 to 136,427
GFF2477
GFF2478 - D-glycero-alpha-D-manno-heptose 7-phosphate kinase, at 136,540 to 137,589
GFF2478
GFF2479 - Oxygen-dependent choline dehydrogenase, at 138,109 to 139,776
GFF2479
Position (kb) 136
137
138 Strain fitness (log2 ratio) -2
-1
0
1 at 136.464 kb on + strand at 136.464 kb on + strand at 136.730 kb on + strand, within GFF2478 at 136.730 kb on + strand, within GFF2478 at 136.730 kb on + strand, within GFF2478 at 136.731 kb on - strand, within GFF2478 at 136.731 kb on - strand, within GFF2478 at 137.159 kb on + strand, within GFF2478 at 137.159 kb on + strand, within GFF2478 at 137.160 kb on - strand, within GFF2478 at 137.160 kb on - strand, within GFF2478 at 137.186 kb on + strand, within GFF2478 at 137.186 kb on + strand, within GFF2478 at 137.186 kb on + strand, within GFF2478 at 137.300 kb on + strand, within GFF2478 at 137.301 kb on - strand, within GFF2478 at 137.301 kb on - strand, within GFF2478 at 137.313 kb on + strand, within GFF2478 at 137.313 kb on + strand, within GFF2478 at 137.314 kb on - strand, within GFF2478 at 137.314 kb on - strand, within GFF2478 at 137.314 kb on - strand, within GFF2478 at 137.314 kb on - strand, within GFF2478 at 137.321 kb on + strand, within GFF2478 at 137.321 kb on + strand, within GFF2478 at 137.322 kb on - strand, within GFF2478 at 137.322 kb on - strand, within GFF2478 at 137.443 kb on - strand, within GFF2478 at 137.450 kb on + strand, within GFF2478 at 137.504 kb on + strand at 137.504 kb on + strand at 137.505 kb on - strand at 137.505 kb on - strand at 137.593 kb on - strand at 137.593 kb on - strand at 137.632 kb on + strand at 137.633 kb on - strand at 137.633 kb on - strand at 137.636 kb on + strand at 137.636 kb on + strand at 137.636 kb on + strand at 137.637 kb on - strand at 137.637 kb on - strand at 137.637 kb on - strand at 137.637 kb on - strand at 137.654 kb on - strand at 137.667 kb on + strand at 137.668 kb on - strand at 137.668 kb on - strand at 137.668 kb on - strand at 137.723 kb on + strand at 137.724 kb on - strand at 137.724 kb on - strand at 137.799 kb on + strand at 137.799 kb on + strand at 137.800 kb on - strand at 137.800 kb on - strand at 137.890 kb on - strand at 138.115 kb on - strand at 138.187 kb on + strand at 138.450 kb on + strand, within GFF2479 at 138.450 kb on + strand, within GFF2479
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 136,464 + -0.1 136,464 + -1.0 136,730 + GFF2478 0.18 +1.0 136,730 + GFF2478 0.18 -0.6 136,730 + GFF2478 0.18 -0.2 136,731 - GFF2478 0.18 -0.3 136,731 - GFF2478 0.18 -0.6 137,159 + GFF2478 0.59 -0.6 137,159 + GFF2478 0.59 +0.2 137,160 - GFF2478 0.59 +0.1 137,160 - GFF2478 0.59 -0.8 137,186 + GFF2478 0.62 -0.1 137,186 + GFF2478 0.62 +0.5 137,186 + GFF2478 0.62 +0.1 137,300 + GFF2478 0.72 -0.4 137,301 - GFF2478 0.72 -0.3 137,301 - GFF2478 0.72 -0.2 137,313 + GFF2478 0.74 -0.2 137,313 + GFF2478 0.74 -0.8 137,314 - GFF2478 0.74 +0.3 137,314 - GFF2478 0.74 +0.5 137,314 - GFF2478 0.74 +0.1 137,314 - GFF2478 0.74 +0.3 137,321 + GFF2478 0.74 +0.5 137,321 + GFF2478 0.74 -0.7 137,322 - GFF2478 0.74 -0.5 137,322 - GFF2478 0.74 +0.0 137,443 - GFF2478 0.86 +0.5 137,450 + GFF2478 0.87 +0.2 137,504 + +0.7 137,504 + -0.9 137,505 - +0.3 137,505 - -0.3 137,593 - -1.0 137,593 - +0.2 137,632 + +0.2 137,633 - +0.0 137,633 - -2.1 137,636 + +1.6 137,636 + -0.3 137,636 + -0.1 137,637 - +0.7 137,637 - -0.1 137,637 - -0.7 137,637 - -0.1 137,654 - -0.0 137,667 + -1.5 137,668 - -1.6 137,668 - -0.1 137,668 - -0.7 137,723 + +0.2 137,724 - +0.3 137,724 - -1.3 137,799 + -1.2 137,799 + -0.5 137,800 - +0.1 137,800 - -0.6 137,890 - -1.9 138,115 - -0.5 138,187 + +1.0 138,450 + GFF2479 0.20 +0.2 138,450 + GFF2479 0.20 -0.1
Or see this region's nucleotide sequence