Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2469 and GFF2470 are separated by 421 nucleotides GFF2470 and GFF2471 are separated by 36 nucleotides GFF2471 and GFF2472 overlap by 1 nucleotides GFF2472 and GFF2473 are separated by 10 nucleotides
GFF2469 - hypothetical protein, at 126,637 to 127,782
GFF2469
GFF2470 - hypothetical protein, at 128,204 to 128,356
GFF2470
GFF2471 - NAD(P) transhydrogenase subunit alpha part 1, at 128,393 to 129,556
GFF2471
GFF2472 - hypothetical protein, at 129,556 to 130,011
GFF2472
GFF2473 - NAD(P) transhydrogenase subunit beta, at 130,022 to 131,428
GFF2473
Position (kb) 128
129
130 Strain fitness (log2 ratio) -2
-1
0
1
2 at 127.442 kb on + strand, within GFF2469 at 127.442 kb on + strand, within GFF2469 at 127.469 kb on + strand, within GFF2469 at 127.469 kb on + strand, within GFF2469 at 127.470 kb on - strand, within GFF2469 at 127.470 kb on - strand, within GFF2469 at 127.470 kb on - strand, within GFF2469 at 127.496 kb on + strand, within GFF2469 at 127.865 kb on - strand at 127.865 kb on - strand at 128.046 kb on + strand at 128.187 kb on - strand at 128.200 kb on + strand at 128.200 kb on + strand at 128.201 kb on - strand at 128.201 kb on - strand at 128.201 kb on - strand at 128.273 kb on + strand, within GFF2470 at 128.274 kb on - strand, within GFF2470 at 128.274 kb on - strand, within GFF2470 at 128.274 kb on - strand, within GFF2470 at 128.455 kb on + strand at 128.604 kb on + strand, within GFF2471 at 128.605 kb on - strand, within GFF2471 at 128.646 kb on - strand, within GFF2471 at 128.814 kb on - strand, within GFF2471 at 129.597 kb on + strand at 129.652 kb on + strand, within GFF2472 at 129.652 kb on + strand, within GFF2472 at 129.653 kb on - strand, within GFF2472 at 129.767 kb on - strand, within GFF2472 at 129.767 kb on - strand, within GFF2472 at 129.769 kb on + strand, within GFF2472 at 129.769 kb on + strand, within GFF2472 at 129.769 kb on + strand, within GFF2472 at 129.770 kb on - strand, within GFF2472 at 129.770 kb on - strand, within GFF2472 at 129.770 kb on - strand, within GFF2472 at 129.995 kb on - strand at 129.995 kb on - strand at 130.049 kb on + strand at 130.349 kb on + strand, within GFF2473 at 130.349 kb on + strand, within GFF2473
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 127,442 + GFF2469 0.70 +0.2 127,442 + GFF2469 0.70 -0.8 127,469 + GFF2469 0.73 -0.6 127,469 + GFF2469 0.73 -0.1 127,470 - GFF2469 0.73 -0.4 127,470 - GFF2469 0.73 +0.0 127,470 - GFF2469 0.73 +0.5 127,496 + GFF2469 0.75 -0.6 127,865 - -0.2 127,865 - -0.9 128,046 + -0.9 128,187 - -0.4 128,200 + +1.2 128,200 + +1.7 128,201 - -0.7 128,201 - +1.8 128,201 - +0.7 128,273 + GFF2470 0.45 -0.2 128,274 - GFF2470 0.46 -2.1 128,274 - GFF2470 0.46 -0.1 128,274 - GFF2470 0.46 +0.4 128,455 + +2.2 128,604 + GFF2471 0.18 +0.6 128,605 - GFF2471 0.18 -0.7 128,646 - GFF2471 0.22 -0.3 128,814 - GFF2471 0.36 +0.3 129,597 + -1.0 129,652 + GFF2472 0.21 -1.2 129,652 + GFF2472 0.21 +0.7 129,653 - GFF2472 0.21 -1.0 129,767 - GFF2472 0.46 +0.2 129,767 - GFF2472 0.46 -1.5 129,769 + GFF2472 0.47 +0.2 129,769 + GFF2472 0.47 -0.5 129,769 + GFF2472 0.47 +0.8 129,770 - GFF2472 0.47 -1.0 129,770 - GFF2472 0.47 +0.5 129,770 - GFF2472 0.47 -0.3 129,995 - -1.5 129,995 - -1.1 130,049 + +0.6 130,349 + GFF2473 0.23 +0.1 130,349 + GFF2473 0.23 -0.0
Or see this region's nucleotide sequence