Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2467 and GFF2468 are separated by 2 nucleotides GFF2468 and GFF2469 are separated by 10 nucleotides GFF2469 and GFF2470 are separated by 421 nucleotides GFF2470 and GFF2471 are separated by 36 nucleotides
GFF2467 - hypothetical protein, at 125,461 to 126,174
GFF2467
GFF2468 - hypothetical protein, at 126,177 to 126,626
GFF2468
GFF2469 - hypothetical protein, at 126,637 to 127,782
GFF2469
GFF2470 - hypothetical protein, at 128,204 to 128,356
GFF2470
GFF2471 - NAD(P) transhydrogenase subunit alpha part 1, at 128,393 to 129,556
GFF2471
Position (kb) 126
127
128 Strain fitness (log2 ratio) -2
-1
0
1
2 at 125.686 kb on + strand, within GFF2467 at 125.687 kb on - strand, within GFF2467 at 125.879 kb on - strand, within GFF2467 at 126.005 kb on + strand, within GFF2467 at 126.006 kb on - strand, within GFF2467 at 126.683 kb on - strand at 126.770 kb on + strand, within GFF2469 at 126.770 kb on + strand, within GFF2469 at 126.771 kb on - strand, within GFF2469 at 126.771 kb on - strand, within GFF2469 at 126.771 kb on - strand, within GFF2469 at 126.812 kb on + strand, within GFF2469 at 126.935 kb on + strand, within GFF2469 at 126.935 kb on + strand, within GFF2469 at 126.935 kb on + strand, within GFF2469 at 126.935 kb on + strand, within GFF2469 at 126.936 kb on - strand, within GFF2469 at 127.304 kb on + strand, within GFF2469 at 127.305 kb on - strand, within GFF2469 at 127.314 kb on + strand, within GFF2469 at 127.346 kb on + strand, within GFF2469 at 127.346 kb on + strand, within GFF2469 at 127.346 kb on + strand, within GFF2469 at 127.346 kb on + strand, within GFF2469 at 127.346 kb on + strand, within GFF2469 at 127.347 kb on - strand, within GFF2469 at 127.347 kb on - strand, within GFF2469 at 127.347 kb on - strand, within GFF2469 at 127.347 kb on - strand, within GFF2469 at 127.347 kb on - strand, within GFF2469 at 127.347 kb on - strand, within GFF2469 at 127.347 kb on - strand, within GFF2469 at 127.347 kb on - strand, within GFF2469 at 127.442 kb on + strand, within GFF2469 at 127.442 kb on + strand, within GFF2469 at 127.469 kb on + strand, within GFF2469 at 127.469 kb on + strand, within GFF2469 at 127.470 kb on - strand, within GFF2469 at 127.470 kb on - strand, within GFF2469 at 127.470 kb on - strand, within GFF2469 at 127.496 kb on + strand, within GFF2469 at 127.865 kb on - strand at 127.865 kb on - strand at 128.046 kb on + strand at 128.187 kb on - strand at 128.200 kb on + strand at 128.200 kb on + strand at 128.201 kb on - strand at 128.201 kb on - strand at 128.201 kb on - strand at 128.273 kb on + strand, within GFF2470 at 128.274 kb on - strand, within GFF2470 at 128.274 kb on - strand, within GFF2470 at 128.274 kb on - strand, within GFF2470 at 128.455 kb on + strand at 128.604 kb on + strand, within GFF2471 at 128.605 kb on - strand, within GFF2471 at 128.646 kb on - strand, within GFF2471
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 125,686 + GFF2467 0.32 +0.9 125,687 - GFF2467 0.32 +0.3 125,879 - GFF2467 0.59 -0.7 126,005 + GFF2467 0.76 -1.2 126,006 - GFF2467 0.76 -1.1 126,683 - -0.9 126,770 + GFF2469 0.12 +0.3 126,770 + GFF2469 0.12 -0.3 126,771 - GFF2469 0.12 -1.0 126,771 - GFF2469 0.12 +0.3 126,771 - GFF2469 0.12 -0.4 126,812 + GFF2469 0.15 -0.0 126,935 + GFF2469 0.26 -0.1 126,935 + GFF2469 0.26 +1.5 126,935 + GFF2469 0.26 -0.7 126,935 + GFF2469 0.26 -0.7 126,936 - GFF2469 0.26 +1.0 127,304 + GFF2469 0.58 -0.3 127,305 - GFF2469 0.58 -0.0 127,314 + GFF2469 0.59 -0.9 127,346 + GFF2469 0.62 -0.5 127,346 + GFF2469 0.62 +0.6 127,346 + GFF2469 0.62 -0.1 127,346 + GFF2469 0.62 +0.2 127,346 + GFF2469 0.62 +0.5 127,347 - GFF2469 0.62 -0.3 127,347 - GFF2469 0.62 +0.9 127,347 - GFF2469 0.62 -0.2 127,347 - GFF2469 0.62 -0.6 127,347 - GFF2469 0.62 +0.6 127,347 - GFF2469 0.62 -0.1 127,347 - GFF2469 0.62 -0.1 127,347 - GFF2469 0.62 +1.0 127,442 + GFF2469 0.70 +0.2 127,442 + GFF2469 0.70 -0.8 127,469 + GFF2469 0.73 -0.6 127,469 + GFF2469 0.73 -0.1 127,470 - GFF2469 0.73 -0.4 127,470 - GFF2469 0.73 +0.0 127,470 - GFF2469 0.73 +0.5 127,496 + GFF2469 0.75 -0.6 127,865 - -0.2 127,865 - -0.9 128,046 + -0.9 128,187 - -0.4 128,200 + +1.2 128,200 + +1.7 128,201 - -0.7 128,201 - +1.8 128,201 - +0.7 128,273 + GFF2470 0.45 -0.2 128,274 - GFF2470 0.46 -2.1 128,274 - GFF2470 0.46 -0.1 128,274 - GFF2470 0.46 +0.4 128,455 + +2.2 128,604 + GFF2471 0.18 +0.6 128,605 - GFF2471 0.18 -0.7 128,646 - GFF2471 0.22 -0.3
Or see this region's nucleotide sequence