Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF238 and GFF239 are separated by 138 nucleotides GFF239 and GFF240 are separated by 12 nucleotides GFF240 and GFF241 are separated by 14 nucleotides GFF241 and GFF242 are separated by 13 nucleotides
GFF238 - Putative aldehyde dehydrogenase AldA, at 248,591 to 250,123
GFF238
GFF239 - hypothetical protein, at 250,262 to 250,468
GFF239
GFF240 - hypothetical protein, at 250,481 to 250,669
GFF240
GFF241 - Non-homologous end joining protein Ku, at 250,684 to 251,484
GFF241
GFF242 - Multifunctional non-homologous end joining protein LigD, at 251,498 to 254,089
GFF242
Position (kb) 250
251
252 Strain fitness (log2 ratio) -1
0
1 at 250.155 kb on + strand at 250.156 kb on - strand at 250.156 kb on - strand at 250.238 kb on + strand at 250.238 kb on + strand at 250.239 kb on - strand at 250.419 kb on - strand, within GFF239 at 250.882 kb on + strand, within GFF241 at 250.904 kb on - strand, within GFF241 at 250.904 kb on - strand, within GFF241 at 250.904 kb on - strand, within GFF241 at 250.904 kb on - strand, within GFF241 at 251.006 kb on - strand, within GFF241 at 251.024 kb on - strand, within GFF241 at 251.024 kb on - strand, within GFF241 at 251.142 kb on + strand, within GFF241 at 251.143 kb on - strand, within GFF241 at 251.143 kb on - strand, within GFF241 at 251.143 kb on - strand, within GFF241 at 251.482 kb on + strand at 251.483 kb on - strand at 251.499 kb on + strand at 251.580 kb on + strand at 251.580 kb on + strand at 251.580 kb on + strand at 251.581 kb on - strand at 251.715 kb on + strand at 251.716 kb on - strand at 251.716 kb on - strand at 251.966 kb on + strand, within GFF242 at 252.106 kb on - strand, within GFF242 at 252.277 kb on - strand, within GFF242 at 252.277 kb on - strand, within GFF242 at 252.279 kb on + strand, within GFF242 at 252.280 kb on - strand, within GFF242 at 252.322 kb on - strand, within GFF242
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 250,155 + +0.1 250,156 - -0.0 250,156 - +0.8 250,238 + +0.3 250,238 + +0.8 250,239 - -0.6 250,419 - GFF239 0.76 -0.3 250,882 + GFF241 0.25 -0.6 250,904 - GFF241 0.27 +0.3 250,904 - GFF241 0.27 +0.5 250,904 - GFF241 0.27 -0.3 250,904 - GFF241 0.27 +1.1 251,006 - GFF241 0.40 -0.8 251,024 - GFF241 0.42 +0.0 251,024 - GFF241 0.42 +0.1 251,142 + GFF241 0.57 +0.3 251,143 - GFF241 0.57 +0.5 251,143 - GFF241 0.57 +0.7 251,143 - GFF241 0.57 -0.0 251,482 + +0.5 251,483 - +0.2 251,499 + -0.4 251,580 + -0.3 251,580 + -0.3 251,580 + +0.2 251,581 - -0.7 251,715 + +0.2 251,716 - -0.3 251,716 - -0.6 251,966 + GFF242 0.18 +1.1 252,106 - GFF242 0.23 -0.6 252,277 - GFF242 0.30 -0.2 252,277 - GFF242 0.30 -0.3 252,279 + GFF242 0.30 +0.5 252,280 - GFF242 0.30 +0.8 252,322 - GFF242 0.32 -0.3
Or see this region's nucleotide sequence