Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2386 and GFF2387 are separated by 115 nucleotides GFF2387 and GFF2388 are separated by 6 nucleotides GFF2388 and GFF2389 overlap by 14 nucleotides
GFF2386 - Sulfate-binding protein, at 39,398 to 40,414
GFF2386
GFF2387 - Phosphoadenosine phosphosulfate reductase, at 40,530 to 41,240
GFF2387
GFF2388 - hypothetical protein, at 41,247 to 41,759
GFF2388
GFF2389 - Sulfite reductase [ferredoxin], at 41,746 to 43,398
GFF2389
Position (kb) 41
42 Strain fitness (log2 ratio) -1
0
1
2 at 40.284 kb on + strand, within GFF2386 at 40.284 kb on + strand, within GFF2386 at 40.284 kb on + strand, within GFF2386 at 40.284 kb on + strand, within GFF2386 at 40.285 kb on - strand, within GFF2386 at 40.285 kb on - strand, within GFF2386 at 40.285 kb on - strand, within GFF2386 at 40.285 kb on - strand, within GFF2386 at 40.285 kb on - strand, within GFF2386 at 40.285 kb on - strand, within GFF2386 at 40.305 kb on + strand, within GFF2386 at 40.505 kb on + strand at 40.553 kb on + strand at 40.700 kb on - strand, within GFF2387 at 41.326 kb on + strand, within GFF2388 at 41.327 kb on - strand, within GFF2388 at 41.338 kb on + strand, within GFF2388 at 41.338 kb on + strand, within GFF2388 at 41.339 kb on - strand, within GFF2388 at 41.339 kb on - strand, within GFF2388 at 41.506 kb on + strand, within GFF2388 at 41.507 kb on - strand, within GFF2388 at 41.566 kb on + strand, within GFF2388 at 41.567 kb on - strand, within GFF2388 at 41.620 kb on - strand, within GFF2388 at 41.843 kb on + strand at 42.258 kb on - strand, within GFF2389 at 42.258 kb on - strand, within GFF2389 at 42.302 kb on + strand, within GFF2389 at 42.302 kb on + strand, within GFF2389 at 42.302 kb on + strand, within GFF2389 at 42.302 kb on + strand, within GFF2389 at 42.308 kb on + strand, within GFF2389 at 42.309 kb on - strand, within GFF2389 at 42.309 kb on - strand, within GFF2389 at 42.662 kb on + strand, within GFF2389 at 42.662 kb on + strand, within GFF2389 at 42.662 kb on + strand, within GFF2389 at 42.662 kb on + strand, within GFF2389 at 42.663 kb on - strand, within GFF2389 at 42.663 kb on - strand, within GFF2389 at 42.692 kb on + strand, within GFF2389 at 42.692 kb on + strand, within GFF2389 at 42.693 kb on - strand, within GFF2389 at 42.693 kb on - strand, within GFF2389 at 42.717 kb on - strand, within GFF2389
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 40,284 + GFF2386 0.87 -0.9 40,284 + GFF2386 0.87 +1.0 40,284 + GFF2386 0.87 +0.0 40,284 + GFF2386 0.87 -0.2 40,285 - GFF2386 0.87 +0.1 40,285 - GFF2386 0.87 -0.4 40,285 - GFF2386 0.87 -0.9 40,285 - GFF2386 0.87 +0.9 40,285 - GFF2386 0.87 +0.6 40,285 - GFF2386 0.87 -0.1 40,305 + GFF2386 0.89 -0.2 40,505 + -0.1 40,553 + -0.4 40,700 - GFF2387 0.24 -1.2 41,326 + GFF2388 0.15 -0.9 41,327 - GFF2388 0.16 +0.6 41,338 + GFF2388 0.18 -0.1 41,338 + GFF2388 0.18 +0.4 41,339 - GFF2388 0.18 +0.5 41,339 - GFF2388 0.18 -0.4 41,506 + GFF2388 0.50 +1.1 41,507 - GFF2388 0.51 +0.5 41,566 + GFF2388 0.62 +0.6 41,567 - GFF2388 0.62 +1.5 41,620 - GFF2388 0.73 +0.9 41,843 + +1.6 42,258 - GFF2389 0.31 +0.6 42,258 - GFF2389 0.31 +0.5 42,302 + GFF2389 0.34 +0.7 42,302 + GFF2389 0.34 +0.5 42,302 + GFF2389 0.34 +0.8 42,302 + GFF2389 0.34 +2.3 42,308 + GFF2389 0.34 +0.2 42,309 - GFF2389 0.34 -1.1 42,309 - GFF2389 0.34 +0.3 42,662 + GFF2389 0.55 +0.6 42,662 + GFF2389 0.55 +0.6 42,662 + GFF2389 0.55 +0.1 42,662 + GFF2389 0.55 +0.9 42,663 - GFF2389 0.55 +1.8 42,663 - GFF2389 0.55 +0.0 42,692 + GFF2389 0.57 +1.5 42,692 + GFF2389 0.57 +0.5 42,693 - GFF2389 0.57 -0.9 42,693 - GFF2389 0.57 +0.4 42,717 - GFF2389 0.59 -0.2
Or see this region's nucleotide sequence