Strain Fitness in Xanthobacter sp. DMC5 around GFF2385

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2383 and GFF2384 overlap by 4 nucleotidesGFF2384 and GFF2385 overlap by 4 nucleotidesGFF2385 and GFF2386 are separated by 111 nucleotides GFF2383 - Sulfate/thiosulfate import ATP-binding protein CysA, at 36,469 to 37,512 GFF2383 GFF2384 - Sulfate transport system permease protein CysW, at 37,509 to 38,435 GFF2384 GFF2385 - Sulfate transport system permease protein CysT, at 38,432 to 39,286 GFF2385 GFF2386 - Sulfate-binding protein, at 39,398 to 40,414 GFF2386 Position (kb) 38 39 40Strain fitness (log2 ratio) -1 0 1at 37.618 kb on + strand, within GFF2384at 37.618 kb on + strand, within GFF2384at 37.627 kb on + strand, within GFF2384at 37.627 kb on + strand, within GFF2384at 37.954 kb on + strand, within GFF2384at 37.993 kb on + strand, within GFF2384at 37.993 kb on + strand, within GFF2384at 37.993 kb on + strand, within GFF2384at 37.993 kb on + strand, within GFF2384at 37.993 kb on + strand, within GFF2384at 37.994 kb on - strand, within GFF2384at 37.994 kb on - strand, within GFF2384at 37.994 kb on - strand, within GFF2384at 37.994 kb on - strand, within GFF2384at 37.994 kb on - strand, within GFF2384at 38.037 kb on + strand, within GFF2384at 38.037 kb on + strand, within GFF2384at 38.038 kb on - strand, within GFF2384at 38.038 kb on - strand, within GFF2384at 38.197 kb on + strand, within GFF2384at 38.197 kb on + strand, within GFF2384at 38.197 kb on + strand, within GFF2384at 38.227 kb on + strand, within GFF2384at 38.227 kb on + strand, within GFF2384at 38.347 kb on + strandat 38.348 kb on - strandat 38.348 kb on - strandat 38.544 kb on + strand, within GFF2385at 38.545 kb on - strand, within GFF2385at 38.634 kb on + strand, within GFF2385at 38.691 kb on - strand, within GFF2385at 38.691 kb on - strand, within GFF2385at 38.913 kb on + strand, within GFF2385at 38.914 kb on - strand, within GFF2385at 39.004 kb on - strand, within GFF2385at 39.007 kb on - strand, within GFF2385at 39.295 kb on + strandat 39.295 kb on + strandat 39.295 kb on + strandat 39.296 kb on - strandat 39.296 kb on - strandat 39.298 kb on - strandat 39.298 kb on - strandat 39.552 kb on + strand, within GFF2386at 39.553 kb on - strand, within GFF2386at 39.556 kb on - strand, within GFF2386at 39.556 kb on - strand, within GFF2386at 39.591 kb on + strand, within GFF2386at 39.591 kb on + strand, within GFF2386at 39.591 kb on + strand, within GFF2386at 39.592 kb on - strand, within GFF2386at 39.592 kb on - strand, within GFF2386at 39.592 kb on - strand, within GFF2386at 39.607 kb on - strand, within GFF2386at 39.741 kb on + strand, within GFF2386at 39.741 kb on + strand, within GFF2386at 39.741 kb on + strand, within GFF2386at 39.741 kb on + strand, within GFF2386at 39.741 kb on + strand, within GFF2386at 39.742 kb on - strand, within GFF2386at 39.843 kb on + strand, within GFF2386at 39.844 kb on - strand, within GFF2386at 39.921 kb on + strand, within GFF2386at 39.922 kb on - strand, within GFF2386at 39.922 kb on - strand, within GFF2386at 40.054 kb on - strand, within GFF2386at 40.132 kb on - strand, within GFF2386at 40.284 kb on + strand, within GFF2386at 40.284 kb on + strand, within GFF2386at 40.284 kb on + strand, within GFF2386at 40.284 kb on + strand, within GFF2386at 40.285 kb on - strand, within GFF2386at 40.285 kb on - strand, within GFF2386at 40.285 kb on - strand, within GFF2386at 40.285 kb on - strand, within GFF2386at 40.285 kb on - strand, within GFF2386at 40.285 kb on - strand, within GFF2386

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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37,618 + GFF2384 0.12 -0.2
37,618 + GFF2384 0.12 +0.1
37,627 + GFF2384 0.13 +0.3
37,627 + GFF2384 0.13 -0.9
37,954 + GFF2384 0.48 +0.6
37,993 + GFF2384 0.52 +0.6
37,993 + GFF2384 0.52 +0.2
37,993 + GFF2384 0.52 +0.6
37,993 + GFF2384 0.52 -0.1
37,993 + GFF2384 0.52 -0.1
37,994 - GFF2384 0.52 -1.1
37,994 - GFF2384 0.52 +0.8
37,994 - GFF2384 0.52 -0.0
37,994 - GFF2384 0.52 +0.3
37,994 - GFF2384 0.52 +1.0
38,037 + GFF2384 0.57 -0.1
38,037 + GFF2384 0.57 +1.0
38,038 - GFF2384 0.57 +0.0
38,038 - GFF2384 0.57 -0.0
38,197 + GFF2384 0.74 +0.5
38,197 + GFF2384 0.74 -0.9
38,197 + GFF2384 0.74 -0.6
38,227 + GFF2384 0.77 +1.3
38,227 + GFF2384 0.77 +1.1
38,347 + -0.1
38,348 - -0.3
38,348 - +0.5
38,544 + GFF2385 0.13 +0.3
38,545 - GFF2385 0.13 +0.1
38,634 + GFF2385 0.24 +0.7
38,691 - GFF2385 0.30 +0.1
38,691 - GFF2385 0.30 -0.7
38,913 + GFF2385 0.56 +0.7
38,914 - GFF2385 0.56 +0.1
39,004 - GFF2385 0.67 -0.5
39,007 - GFF2385 0.67 -0.6
39,295 + -0.4
39,295 + +0.1
39,295 + +0.1
39,296 - +0.4
39,296 - -0.3
39,298 - +0.7
39,298 - +0.3
39,552 + GFF2386 0.15 +0.4
39,553 - GFF2386 0.15 +0.5
39,556 - GFF2386 0.16 -0.3
39,556 - GFF2386 0.16 +0.2
39,591 + GFF2386 0.19 +0.5
39,591 + GFF2386 0.19 +0.5
39,591 + GFF2386 0.19 -0.6
39,592 - GFF2386 0.19 -1.1
39,592 - GFF2386 0.19 +0.1
39,592 - GFF2386 0.19 -1.1
39,607 - GFF2386 0.21 -0.5
39,741 + GFF2386 0.34 +0.6
39,741 + GFF2386 0.34 -0.1
39,741 + GFF2386 0.34 -1.1
39,741 + GFF2386 0.34 -0.3
39,741 + GFF2386 0.34 +0.3
39,742 - GFF2386 0.34 -0.5
39,843 + GFF2386 0.44 +0.3
39,844 - GFF2386 0.44 +0.4
39,921 + GFF2386 0.51 -0.5
39,922 - GFF2386 0.52 +0.0
39,922 - GFF2386 0.52 +0.1
40,054 - GFF2386 0.65 -0.9
40,132 - GFF2386 0.72 +0.7
40,284 + GFF2386 0.87 -0.9
40,284 + GFF2386 0.87 +1.0
40,284 + GFF2386 0.87 +0.0
40,284 + GFF2386 0.87 -0.2
40,285 - GFF2386 0.87 +0.1
40,285 - GFF2386 0.87 -0.4
40,285 - GFF2386 0.87 -0.9
40,285 - GFF2386 0.87 +0.9
40,285 - GFF2386 0.87 +0.6
40,285 - GFF2386 0.87 -0.1

Or see this region's nucleotide sequence