Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2380 and GFF2381 are separated by 272 nucleotides GFF2381 and GFF2382 are separated by 33 nucleotides GFF2382 and GFF2383 are separated by 93 nucleotides
GFF2380 - GTP 3',8-cyclase, at 33,827 to 34,882
GFF2380
GFF2381 - hypothetical protein, at 35,155 to 36,156
GFF2381
GFF2382 - hypothetical protein, at 36,190 to 36,375
GFF2382
GFF2383 - Sulfate/thiosulfate import ATP-binding protein CysA, at 36,469 to 37,512
GFF2383
Position (kb) 35
36
37 Strain fitness (log2 ratio) -2
-1
0
1 at 34.499 kb on + strand, within GFF2380 at 34.499 kb on + strand, within GFF2380 at 34.500 kb on - strand, within GFF2380 at 34.500 kb on - strand, within GFF2380 at 34.500 kb on - strand, within GFF2380 at 34.586 kb on + strand, within GFF2380 at 34.587 kb on - strand, within GFF2380 at 34.694 kb on + strand, within GFF2380 at 34.694 kb on + strand, within GFF2380 at 34.694 kb on + strand, within GFF2380 at 34.694 kb on + strand, within GFF2380 at 34.695 kb on - strand, within GFF2380 at 34.695 kb on - strand, within GFF2380 at 34.695 kb on - strand, within GFF2380 at 34.695 kb on - strand, within GFF2380 at 34.695 kb on - strand, within GFF2380 at 34.695 kb on - strand, within GFF2380 at 34.953 kb on - strand at 35.003 kb on - strand at 35.003 kb on - strand at 35.003 kb on - strand at 35.006 kb on + strand at 35.020 kb on + strand at 35.021 kb on - strand at 35.386 kb on + strand, within GFF2381 at 35.387 kb on - strand, within GFF2381 at 35.427 kb on + strand, within GFF2381 at 35.447 kb on - strand, within GFF2381 at 35.447 kb on - strand, within GFF2381 at 35.494 kb on + strand, within GFF2381 at 35.494 kb on + strand, within GFF2381 at 35.494 kb on + strand, within GFF2381 at 35.495 kb on - strand, within GFF2381 at 35.495 kb on - strand, within GFF2381 at 35.495 kb on - strand, within GFF2381 at 35.686 kb on - strand, within GFF2381 at 35.821 kb on + strand, within GFF2381 at 35.822 kb on - strand, within GFF2381 at 35.951 kb on - strand, within GFF2381 at 36.022 kb on + strand, within GFF2381 at 36.424 kb on + strand at 36.425 kb on - strand at 36.489 kb on - strand at 36.755 kb on + strand, within GFF2383 at 36.755 kb on + strand, within GFF2383 at 36.755 kb on + strand, within GFF2383 at 36.839 kb on + strand, within GFF2383 at 36.839 kb on + strand, within GFF2383 at 36.839 kb on + strand, within GFF2383 at 36.839 kb on + strand, within GFF2383 at 36.840 kb on - strand, within GFF2383 at 36.840 kb on - strand, within GFF2383 at 36.840 kb on - strand, within GFF2383 at 36.840 kb on - strand, within GFF2383 at 36.840 kb on - strand, within GFF2383
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 34,499 + GFF2380 0.64 +0.1 34,499 + GFF2380 0.64 -0.2 34,500 - GFF2380 0.64 -0.3 34,500 - GFF2380 0.64 -0.0 34,500 - GFF2380 0.64 -0.3 34,586 + GFF2380 0.72 +1.1 34,587 - GFF2380 0.72 +1.2 34,694 + GFF2380 0.82 +0.6 34,694 + GFF2380 0.82 +1.2 34,694 + GFF2380 0.82 +1.0 34,694 + GFF2380 0.82 +0.2 34,695 - GFF2380 0.82 +0.0 34,695 - GFF2380 0.82 -1.2 34,695 - GFF2380 0.82 -2.2 34,695 - GFF2380 0.82 +0.5 34,695 - GFF2380 0.82 -0.1 34,695 - GFF2380 0.82 -0.4 34,953 - -0.1 35,003 - -0.3 35,003 - +0.1 35,003 - +0.8 35,006 + -0.3 35,020 + -0.6 35,021 - +1.0 35,386 + GFF2381 0.23 +0.3 35,387 - GFF2381 0.23 +0.2 35,427 + GFF2381 0.27 -0.7 35,447 - GFF2381 0.29 -0.7 35,447 - GFF2381 0.29 +0.6 35,494 + GFF2381 0.34 +0.5 35,494 + GFF2381 0.34 +1.5 35,494 + GFF2381 0.34 -1.0 35,495 - GFF2381 0.34 +0.1 35,495 - GFF2381 0.34 +0.1 35,495 - GFF2381 0.34 +0.3 35,686 - GFF2381 0.53 +0.7 35,821 + GFF2381 0.66 +0.5 35,822 - GFF2381 0.67 +0.7 35,951 - GFF2381 0.79 -0.4 36,022 + GFF2381 0.87 -0.1 36,424 + +0.5 36,425 - +0.5 36,489 - +0.3 36,755 + GFF2383 0.27 -0.6 36,755 + GFF2383 0.27 -0.7 36,755 + GFF2383 0.27 -0.7 36,839 + GFF2383 0.35 +0.2 36,839 + GFF2383 0.35 +0.7 36,839 + GFF2383 0.35 +0.0 36,839 + GFF2383 0.35 -0.8 36,840 - GFF2383 0.36 -0.1 36,840 - GFF2383 0.36 -0.1 36,840 - GFF2383 0.36 +0.2 36,840 - GFF2383 0.36 +0.4 36,840 - GFF2383 0.36 -1.1
Or see this region's nucleotide sequence