Strain Fitness in Xanthobacter sp. DMC5 around GFF2378

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2377 and GFF2378 are separated by 54 nucleotidesGFF2378 and GFF2379 are separated by 115 nucleotidesGFF2379 and GFF2380 are separated by 225 nucleotides GFF2377 - 3-ketoacyl-CoA thiolase, at 31,126 to 32,298 GFF2377 GFF2378 - hypothetical protein, at 32,353 to 33,108 GFF2378 GFF2379 - hypothetical protein, at 33,224 to 33,601 GFF2379 GFF2380 - GTP 3',8-cyclase, at 33,827 to 34,882 GFF2380 Position (kb) 32 33 34Strain fitness (log2 ratio) -2 -1 0 1at 31.420 kb on + strand, within GFF2377at 31.420 kb on + strand, within GFF2377at 31.420 kb on + strand, within GFF2377at 31.420 kb on + strand, within GFF2377at 31.421 kb on - strand, within GFF2377at 31.421 kb on - strand, within GFF2377at 31.421 kb on - strand, within GFF2377at 31.421 kb on - strand, within GFF2377at 31.421 kb on - strand, within GFF2377at 31.421 kb on - strand, within GFF2377at 31.421 kb on - strand, within GFF2377at 31.422 kb on + strand, within GFF2377at 31.423 kb on - strand, within GFF2377at 31.522 kb on + strand, within GFF2377at 31.588 kb on + strand, within GFF2377at 31.588 kb on + strand, within GFF2377at 31.589 kb on - strand, within GFF2377at 31.589 kb on - strand, within GFF2377at 31.669 kb on + strand, within GFF2377at 31.669 kb on + strand, within GFF2377at 31.732 kb on + strand, within GFF2377at 31.733 kb on - strand, within GFF2377at 31.733 kb on - strand, within GFF2377at 31.733 kb on - strand, within GFF2377at 32.018 kb on - strand, within GFF2377at 32.025 kb on + strand, within GFF2377at 32.025 kb on + strand, within GFF2377at 32.054 kb on - strand, within GFF2377at 32.054 kb on - strand, within GFF2377at 32.054 kb on - strand, within GFF2377at 32.269 kb on + strandat 32.269 kb on + strandat 32.270 kb on - strandat 32.270 kb on - strandat 32.270 kb on - strandat 32.276 kb on - strandat 32.303 kb on + strandat 32.303 kb on + strandat 32.310 kb on + strandat 32.310 kb on + strandat 32.310 kb on + strandat 32.310 kb on + strandat 32.311 kb on - strandat 32.357 kb on + strandat 32.444 kb on + strand, within GFF2378at 32.568 kb on - strand, within GFF2378at 32.780 kb on + strand, within GFF2378at 32.780 kb on + strand, within GFF2378at 32.780 kb on + strand, within GFF2378at 32.780 kb on + strand, within GFF2378at 32.780 kb on + strand, within GFF2378at 32.781 kb on - strand, within GFF2378at 32.781 kb on - strand, within GFF2378at 32.786 kb on + strand, within GFF2378at 32.787 kb on - strand, within GFF2378at 32.787 kb on - strand, within GFF2378at 33.195 kb on - strandat 33.265 kb on - strand, within GFF2379at 33.298 kb on - strand, within GFF2379at 33.303 kb on + strand, within GFF2379at 33.321 kb on + strand, within GFF2379at 33.322 kb on - strand, within GFF2379at 33.322 kb on - strand, within GFF2379at 33.322 kb on - strand, within GFF2379at 33.366 kb on + strand, within GFF2379at 33.366 kb on + strand, within GFF2379at 33.480 kb on + strand, within GFF2379at 33.481 kb on - strand, within GFF2379at 33.698 kb on + strandat 33.698 kb on + strandat 33.704 kb on - strandat 33.705 kb on + strandat 33.705 kb on + strandat 33.705 kb on + strandat 33.706 kb on - strandat 33.706 kb on - strandat 33.923 kb on + strandat 33.924 kb on - strandat 33.924 kb on - strandat 33.968 kb on + strand, within GFF2380at 33.968 kb on + strand, within GFF2380

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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31,420 + GFF2377 0.25 +0.1
31,420 + GFF2377 0.25 +1.7
31,420 + GFF2377 0.25 +0.1
31,420 + GFF2377 0.25 -0.1
31,421 - GFF2377 0.25 -0.2
31,421 - GFF2377 0.25 +0.1
31,421 - GFF2377 0.25 +0.5
31,421 - GFF2377 0.25 -0.1
31,421 - GFF2377 0.25 -0.1
31,421 - GFF2377 0.25 -0.5
31,421 - GFF2377 0.25 +0.5
31,422 + GFF2377 0.25 +0.9
31,423 - GFF2377 0.25 -0.3
31,522 + GFF2377 0.34 +0.3
31,588 + GFF2377 0.39 -0.0
31,588 + GFF2377 0.39 +0.1
31,589 - GFF2377 0.39 +0.5
31,589 - GFF2377 0.39 -0.5
31,669 + GFF2377 0.46 +0.2
31,669 + GFF2377 0.46 +0.3
31,732 + GFF2377 0.52 -0.3
31,733 - GFF2377 0.52 +0.7
31,733 - GFF2377 0.52 +1.1
31,733 - GFF2377 0.52 +0.9
32,018 - GFF2377 0.76 +0.4
32,025 + GFF2377 0.77 -1.6
32,025 + GFF2377 0.77 +0.7
32,054 - GFF2377 0.79 +0.8
32,054 - GFF2377 0.79 -0.9
32,054 - GFF2377 0.79 +0.5
32,269 + -0.4
32,269 + -0.3
32,270 - -0.7
32,270 - -0.7
32,270 - -0.1
32,276 - -1.0
32,303 + -0.2
32,303 + -0.9
32,310 + -0.5
32,310 + -0.4
32,310 + +0.4
32,310 + -1.5
32,311 - +0.6
32,357 + +0.3
32,444 + GFF2378 0.12 +0.3
32,568 - GFF2378 0.28 -0.2
32,780 + GFF2378 0.56 -0.2
32,780 + GFF2378 0.56 +0.8
32,780 + GFF2378 0.56 +0.0
32,780 + GFF2378 0.56 -2.1
32,780 + GFF2378 0.56 +0.9
32,781 - GFF2378 0.57 +0.3
32,781 - GFF2378 0.57 +0.0
32,786 + GFF2378 0.57 +0.1
32,787 - GFF2378 0.57 -0.6
32,787 - GFF2378 0.57 +0.1
33,195 - -1.5
33,265 - GFF2379 0.11 -1.4
33,298 - GFF2379 0.20 +1.2
33,303 + GFF2379 0.21 +0.5
33,321 + GFF2379 0.26 -0.1
33,322 - GFF2379 0.26 -1.7
33,322 - GFF2379 0.26 +0.5
33,322 - GFF2379 0.26 +0.0
33,366 + GFF2379 0.38 +0.1
33,366 + GFF2379 0.38 +0.2
33,480 + GFF2379 0.68 -0.9
33,481 - GFF2379 0.68 -0.5
33,698 + +0.4
33,698 + +0.5
33,704 - +0.4
33,705 + -0.6
33,705 + +0.4
33,705 + -0.3
33,706 - -0.3
33,706 - -0.9
33,923 + +1.1
33,924 - +0.6
33,924 - +0.3
33,968 + GFF2380 0.13 -0.1
33,968 + GFF2380 0.13 +0.9

Or see this region's nucleotide sequence