Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2272 and GFF2273 are separated by 70 nucleotides GFF2273 and GFF2274 are separated by 22 nucleotides GFF2274 and GFF2275 are separated by 15 nucleotides GFF2275 and GFF2276 are separated by 128 nucleotides GFF2276 and GFF2277 are separated by 6 nucleotides
GFF2272 - hypothetical protein, at 982,049 to 982,675
GFF2272
GFF2273 - hypothetical protein, at 982,746 to 983,300
GFF2273
GFF2274 - hypothetical protein, at 983,323 to 983,559
GFF2274
GFF2275 - hypothetical protein, at 983,575 to 984,009
GFF2275
GFF2276 - NAD(P)H azoreductase, at 984,138 to 984,974
GFF2276
GFF2277 - hypothetical protein, at 984,981 to 985,427
GFF2277
Position (kb) 983
984
985 Strain fitness (log2 ratio) -1
0
1
2 at 983.312 kb on - strand at 983.558 kb on - strand at 983.606 kb on + strand at 983.637 kb on + strand, within GFF2275 at 983.638 kb on - strand, within GFF2275 at 983.638 kb on - strand, within GFF2275 at 983.708 kb on + strand, within GFF2275 at 983.709 kb on - strand, within GFF2275 at 983.709 kb on - strand, within GFF2275 at 983.931 kb on - strand, within GFF2275 at 983.931 kb on - strand, within GFF2275 at 983.931 kb on - strand, within GFF2275 at 983.931 kb on - strand, within GFF2275 at 984.057 kb on - strand at 984.717 kb on + strand, within GFF2276 at 984.718 kb on - strand, within GFF2276 at 984.769 kb on - strand, within GFF2276 at 984.943 kb on - strand at 984.943 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 983,312 - -0.1 983,558 - +0.4 983,606 + -0.2 983,637 + GFF2275 0.14 +2.3 983,638 - GFF2275 0.14 +0.5 983,638 - GFF2275 0.14 +0.4 983,708 + GFF2275 0.31 -1.2 983,709 - GFF2275 0.31 -0.6 983,709 - GFF2275 0.31 -0.5 983,931 - GFF2275 0.82 +0.7 983,931 - GFF2275 0.82 +0.8 983,931 - GFF2275 0.82 -0.9 983,931 - GFF2275 0.82 +0.3 984,057 - +1.5 984,717 + GFF2276 0.69 +0.0 984,718 - GFF2276 0.69 -0.7 984,769 - GFF2276 0.75 +0.3 984,943 - -0.4 984,943 - -0.1
Or see this region's nucleotide sequence