Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF225 and GFF226 are separated by 298 nucleotides GFF226 and GFF227 are separated by 101 nucleotides
GFF225 - hypothetical protein, at 235,822 to 237,033
GFF225
GFF226 - Agmatinase, at 237,332 to 238,312
GFF226
GFF227 - Sodium-potassium/proton antiporter ChaA, at 238,414 to 239,511
GFF227
Position (kb) 237
238
239 Strain fitness (log2 ratio) -1
0
1 at 236.417 kb on + strand, within GFF225 at 236.798 kb on + strand, within GFF225 at 236.798 kb on + strand, within GFF225 at 236.798 kb on + strand, within GFF225 at 236.798 kb on + strand, within GFF225 at 236.799 kb on - strand, within GFF225 at 236.799 kb on - strand, within GFF225 at 237.088 kb on - strand at 237.104 kb on + strand at 237.141 kb on + strand at 237.243 kb on + strand at 237.244 kb on - strand at 237.244 kb on - strand at 237.244 kb on - strand at 237.246 kb on + strand at 237.269 kb on - strand at 237.269 kb on - strand at 237.331 kb on + strand at 237.331 kb on + strand at 237.331 kb on + strand at 237.584 kb on + strand, within GFF226 at 237.585 kb on - strand, within GFF226 at 237.585 kb on - strand, within GFF226 at 237.704 kb on + strand, within GFF226 at 237.704 kb on + strand, within GFF226 at 237.704 kb on + strand, within GFF226 at 237.755 kb on + strand, within GFF226 at 237.755 kb on + strand, within GFF226 at 237.756 kb on - strand, within GFF226 at 237.953 kb on + strand, within GFF226 at 237.953 kb on + strand, within GFF226 at 237.954 kb on - strand, within GFF226 at 238.049 kb on + strand, within GFF226 at 238.209 kb on - strand, within GFF226 at 238.259 kb on + strand at 238.260 kb on - strand at 238.260 kb on - strand at 238.310 kb on + strand at 238.338 kb on - strand at 238.339 kb on + strand at 238.340 kb on - strand at 238.378 kb on + strand at 238.378 kb on + strand at 238.441 kb on + strand at 238.442 kb on - strand at 238.442 kb on - strand at 238.837 kb on + strand, within GFF227 at 238.838 kb on - strand, within GFF227 at 238.936 kb on + strand, within GFF227 at 238.936 kb on + strand, within GFF227 at 238.936 kb on + strand, within GFF227 at 238.936 kb on + strand, within GFF227 at 238.936 kb on + strand, within GFF227 at 238.937 kb on - strand, within GFF227 at 238.937 kb on - strand, within GFF227 at 238.937 kb on - strand, within GFF227 at 238.937 kb on - strand, within GFF227 at 238.937 kb on - strand, within GFF227 at 238.937 kb on - strand, within GFF227 at 238.938 kb on + strand, within GFF227 at 238.938 kb on + strand, within GFF227 at 238.939 kb on - strand, within GFF227 at 238.939 kb on - strand, within GFF227 at 238.963 kb on + strand, within GFF227 at 238.964 kb on - strand, within GFF227 at 238.979 kb on - strand, within GFF227 at 238.979 kb on - strand, within GFF227 at 238.979 kb on - strand, within GFF227 at 238.979 kb on - strand, within GFF227
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 236,417 + GFF225 0.49 -0.3 236,798 + GFF225 0.81 -0.3 236,798 + GFF225 0.81 +1.0 236,798 + GFF225 0.81 -0.1 236,798 + GFF225 0.81 +0.5 236,799 - GFF225 0.81 -1.2 236,799 - GFF225 0.81 +0.3 237,088 - -0.3 237,104 + +0.7 237,141 + -0.1 237,243 + -0.3 237,244 - -0.9 237,244 - +0.8 237,244 - -0.4 237,246 + -0.4 237,269 - -0.0 237,269 - +0.9 237,331 + -0.9 237,331 + -0.7 237,331 + -0.4 237,584 + GFF226 0.26 -0.3 237,585 - GFF226 0.26 +0.5 237,585 - GFF226 0.26 -0.3 237,704 + GFF226 0.38 +0.4 237,704 + GFF226 0.38 -0.1 237,704 + GFF226 0.38 -1.7 237,755 + GFF226 0.43 +0.3 237,755 + GFF226 0.43 -0.6 237,756 - GFF226 0.43 -0.3 237,953 + GFF226 0.63 -0.1 237,953 + GFF226 0.63 +0.8 237,954 - GFF226 0.63 -0.1 238,049 + GFF226 0.73 +0.4 238,209 - GFF226 0.89 -1.0 238,259 + -0.3 238,260 - +0.5 238,260 - -0.4 238,310 + -1.1 238,338 - -0.0 238,339 + +1.4 238,340 - -0.4 238,378 + -0.4 238,378 + +0.4 238,441 + +0.9 238,442 - +0.7 238,442 - -0.0 238,837 + GFF227 0.39 -0.6 238,838 - GFF227 0.39 +0.0 238,936 + GFF227 0.48 -0.8 238,936 + GFF227 0.48 -0.2 238,936 + GFF227 0.48 -0.7 238,936 + GFF227 0.48 -0.6 238,936 + GFF227 0.48 -0.7 238,937 - GFF227 0.48 +0.6 238,937 - GFF227 0.48 -0.8 238,937 - GFF227 0.48 +0.7 238,937 - GFF227 0.48 +0.2 238,937 - GFF227 0.48 +0.5 238,937 - GFF227 0.48 -0.1 238,938 + GFF227 0.48 -1.6 238,938 + GFF227 0.48 -0.8 238,939 - GFF227 0.48 -0.9 238,939 - GFF227 0.48 +1.0 238,963 + GFF227 0.50 +1.2 238,964 - GFF227 0.50 -0.2 238,979 - GFF227 0.51 -0.1 238,979 - GFF227 0.51 +0.2 238,979 - GFF227 0.51 -0.1 238,979 - GFF227 0.51 +0.2
Or see this region's nucleotide sequence