Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2236 and GFF2237 are separated by 218 nucleotides GFF2237 and GFF2238 are separated by 111 nucleotides GFF2238 and GFF2239 are separated by 69 nucleotides
GFF2236 - hypothetical protein, at 939,660 to 940,172
GFF2236
GFF2237 - Alpha-ketoglutarate-dependent dioxygenase AlkB, at 940,391 to 941,032
GFF2237
GFF2238 - hypothetical protein, at 941,144 to 942,094
GFF2238
GFF2239 - Signal transduction histidine-protein kinase AtoS, at 942,164 to 943,561
GFF2239
Position (kb) 941
942
943 Strain fitness (log2 ratio) -1
0
1 at 940.268 kb on + strand at 940.269 kb on - strand at 940.619 kb on + strand, within GFF2237 at 940.743 kb on - strand, within GFF2237 at 940.746 kb on - strand, within GFF2237 at 940.746 kb on - strand, within GFF2237 at 941.366 kb on + strand, within GFF2238 at 941.367 kb on - strand, within GFF2238 at 941.367 kb on - strand, within GFF2238 at 942.002 kb on + strand at 942.050 kb on + strand at 942.050 kb on + strand at 942.050 kb on + strand at 942.051 kb on - strand at 942.051 kb on - strand at 942.113 kb on - strand at 942.127 kb on + strand at 942.127 kb on + strand at 942.127 kb on + strand at 942.127 kb on + strand at 942.128 kb on - strand at 942.128 kb on - strand at 942.317 kb on + strand, within GFF2239 at 942.317 kb on + strand, within GFF2239 at 942.317 kb on + strand, within GFF2239 at 942.342 kb on + strand, within GFF2239 at 942.343 kb on - strand, within GFF2239 at 942.735 kb on - strand, within GFF2239 at 942.735 kb on - strand, within GFF2239 at 942.918 kb on - strand, within GFF2239
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 940,268 + +0.4 940,269 - -0.1 940,619 + GFF2237 0.36 -0.7 940,743 - GFF2237 0.55 -0.3 940,746 - GFF2237 0.55 -0.2 940,746 - GFF2237 0.55 +0.5 941,366 + GFF2238 0.23 +0.1 941,367 - GFF2238 0.23 +0.0 941,367 - GFF2238 0.23 -0.1 942,002 + -0.2 942,050 + -0.1 942,050 + -1.1 942,050 + +1.0 942,051 - +0.8 942,051 - -0.1 942,113 - +0.0 942,127 + -0.5 942,127 + +0.1 942,127 + +0.3 942,127 + -1.1 942,128 - -0.1 942,128 - +0.3 942,317 + GFF2239 0.11 +0.3 942,317 + GFF2239 0.11 -1.1 942,317 + GFF2239 0.11 -1.4 942,342 + GFF2239 0.13 +0.0 942,343 - GFF2239 0.13 +0.4 942,735 - GFF2239 0.41 -0.2 942,735 - GFF2239 0.41 +1.2 942,918 - GFF2239 0.54 -0.1
Or see this region's nucleotide sequence