Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2139 and GFF2140 are separated by 67 nucleotides GFF2140 and GFF2141 are separated by 136 nucleotides GFF2141 and GFF2142 are separated by 11 nucleotides
GFF2139 - L-rhamnonate dehydratase, at 827,517 to 828,701
GFF2139
GFF2140 - Inner membrane transport protein RhmT, at 828,769 to 830,079
GFF2140
GFF2141 - 2-dehydro-3-deoxy-L-rhamnonate dehydrogenase (NAD(+)), at 830,216 to 830,968
GFF2141
GFF2142 - Ureidoglycolate lyase, at 830,980 to 831,822
GFF2142
Position (kb) 828
829
830
831 Strain fitness (log2 ratio) -2
-1
0
1 at 827.792 kb on - strand, within GFF2139 at 827.950 kb on + strand, within GFF2139 at 827.951 kb on - strand, within GFF2139 at 827.960 kb on - strand, within GFF2139 at 827.960 kb on - strand, within GFF2139 at 827.960 kb on - strand, within GFF2139 at 827.960 kb on - strand, within GFF2139 at 828.035 kb on - strand, within GFF2139 at 828.064 kb on + strand, within GFF2139 at 828.064 kb on + strand, within GFF2139 at 828.064 kb on + strand, within GFF2139 at 828.065 kb on - strand, within GFF2139 at 828.065 kb on - strand, within GFF2139 at 828.226 kb on + strand, within GFF2139 at 828.226 kb on + strand, within GFF2139 at 828.227 kb on - strand, within GFF2139 at 828.227 kb on - strand, within GFF2139 at 828.227 kb on - strand, within GFF2139 at 828.358 kb on + strand, within GFF2139 at 828.358 kb on + strand, within GFF2139 at 828.376 kb on + strand, within GFF2139 at 828.525 kb on + strand, within GFF2139 at 828.526 kb on - strand, within GFF2139 at 828.572 kb on - strand, within GFF2139 at 828.581 kb on - strand, within GFF2139 at 828.622 kb on + strand at 828.622 kb on + strand at 828.623 kb on - strand at 828.640 kb on + strand at 828.641 kb on - strand at 828.641 kb on - strand at 828.667 kb on + strand at 828.668 kb on - strand at 828.866 kb on + strand at 828.866 kb on + strand at 828.866 kb on + strand at 828.866 kb on + strand at 828.866 kb on + strand at 828.866 kb on + strand at 828.866 kb on + strand at 828.866 kb on + strand at 828.866 kb on + strand at 828.867 kb on - strand at 828.867 kb on - strand at 828.996 kb on - strand, within GFF2140 at 829.187 kb on + strand, within GFF2140 at 829.187 kb on + strand, within GFF2140 at 829.187 kb on + strand, within GFF2140 at 829.187 kb on + strand, within GFF2140 at 829.187 kb on + strand, within GFF2140 at 829.187 kb on + strand, within GFF2140 at 829.188 kb on - strand, within GFF2140 at 829.286 kb on + strand, within GFF2140 at 829.301 kb on + strand, within GFF2140 at 829.301 kb on + strand, within GFF2140 at 829.301 kb on + strand, within GFF2140 at 829.325 kb on + strand, within GFF2140 at 829.325 kb on + strand, within GFF2140 at 829.326 kb on - strand, within GFF2140 at 829.326 kb on - strand, within GFF2140 at 829.349 kb on + strand, within GFF2140 at 829.352 kb on - strand, within GFF2140 at 829.487 kb on + strand, within GFF2140 at 829.487 kb on + strand, within GFF2140 at 829.493 kb on + strand, within GFF2140 at 829.493 kb on + strand, within GFF2140 at 829.493 kb on + strand, within GFF2140 at 829.493 kb on + strand, within GFF2140 at 829.493 kb on + strand, within GFF2140 at 829.494 kb on - strand, within GFF2140 at 829.494 kb on - strand, within GFF2140 at 829.494 kb on - strand, within GFF2140 at 829.538 kb on + strand, within GFF2140 at 829.637 kb on + strand, within GFF2140 at 829.638 kb on - strand, within GFF2140 at 829.691 kb on + strand, within GFF2140 at 829.692 kb on - strand, within GFF2140 at 829.751 kb on + strand, within GFF2140 at 829.751 kb on + strand, within GFF2140 at 829.752 kb on - strand, within GFF2140 at 829.752 kb on - strand, within GFF2140 at 829.763 kb on + strand, within GFF2140 at 829.883 kb on + strand, within GFF2140 at 829.883 kb on + strand, within GFF2140 at 829.883 kb on + strand, within GFF2140 at 829.883 kb on + strand, within GFF2140 at 829.884 kb on - strand, within GFF2140 at 829.896 kb on - strand, within GFF2140 at 830.000 kb on + strand at 830.000 kb on + strand at 830.000 kb on + strand at 830.000 kb on + strand at 830.000 kb on + strand at 830.001 kb on - strand at 830.001 kb on - strand at 830.001 kb on - strand at 830.001 kb on - strand at 830.001 kb on - strand at 830.034 kb on + strand at 830.034 kb on + strand at 830.035 kb on - strand at 830.220 kb on + strand at 830.220 kb on + strand at 830.499 kb on + strand, within GFF2141 at 830.500 kb on - strand, within GFF2141 at 830.645 kb on + strand, within GFF2141 at 830.646 kb on - strand, within GFF2141 at 831.057 kb on - strand at 831.057 kb on - strand at 831.057 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 827,792 - GFF2139 0.23 +0.5 827,950 + GFF2139 0.37 -1.6 827,951 - GFF2139 0.37 +0.2 827,960 - GFF2139 0.37 -0.6 827,960 - GFF2139 0.37 +0.3 827,960 - GFF2139 0.37 -1.1 827,960 - GFF2139 0.37 -0.5 828,035 - GFF2139 0.44 +0.2 828,064 + GFF2139 0.46 -0.2 828,064 + GFF2139 0.46 -0.8 828,064 + GFF2139 0.46 -0.1 828,065 - GFF2139 0.46 -0.4 828,065 - GFF2139 0.46 -0.5 828,226 + GFF2139 0.60 +0.0 828,226 + GFF2139 0.60 -2.1 828,227 - GFF2139 0.60 +0.3 828,227 - GFF2139 0.60 -1.3 828,227 - GFF2139 0.60 +0.3 828,358 + GFF2139 0.71 -0.4 828,358 + GFF2139 0.71 +0.3 828,376 + GFF2139 0.72 -0.3 828,525 + GFF2139 0.85 +0.7 828,526 - GFF2139 0.85 -0.2 828,572 - GFF2139 0.89 +0.3 828,581 - GFF2139 0.90 -0.1 828,622 + -0.6 828,622 + +0.5 828,623 - -0.3 828,640 + -0.1 828,641 - +0.1 828,641 - +1.0 828,667 + -0.3 828,668 - -0.5 828,866 + +0.4 828,866 + -0.7 828,866 + +0.2 828,866 + +0.2 828,866 + +1.0 828,866 + -0.8 828,866 + -0.5 828,866 + -0.1 828,866 + +0.8 828,867 - -0.2 828,867 - -0.7 828,996 - GFF2140 0.17 +0.4 829,187 + GFF2140 0.32 -0.6 829,187 + GFF2140 0.32 +0.7 829,187 + GFF2140 0.32 +0.2 829,187 + GFF2140 0.32 +0.7 829,187 + GFF2140 0.32 +0.3 829,187 + GFF2140 0.32 -0.5 829,188 - GFF2140 0.32 +0.1 829,286 + GFF2140 0.39 -0.4 829,301 + GFF2140 0.41 -0.3 829,301 + GFF2140 0.41 +0.7 829,301 + GFF2140 0.41 +0.2 829,325 + GFF2140 0.42 -0.8 829,325 + GFF2140 0.42 +1.0 829,326 - GFF2140 0.42 -0.5 829,326 - GFF2140 0.42 -0.8 829,349 + GFF2140 0.44 -0.1 829,352 - GFF2140 0.44 -0.3 829,487 + GFF2140 0.55 +0.2 829,487 + GFF2140 0.55 -1.8 829,493 + GFF2140 0.55 -0.3 829,493 + GFF2140 0.55 -0.1 829,493 + GFF2140 0.55 -0.2 829,493 + GFF2140 0.55 +0.4 829,493 + GFF2140 0.55 -2.3 829,494 - GFF2140 0.55 +1.1 829,494 - GFF2140 0.55 +0.3 829,494 - GFF2140 0.55 +0.2 829,538 + GFF2140 0.59 -0.2 829,637 + GFF2140 0.66 -0.3 829,638 - GFF2140 0.66 +0.5 829,691 + GFF2140 0.70 -0.8 829,692 - GFF2140 0.70 +1.1 829,751 + GFF2140 0.75 +0.3 829,751 + GFF2140 0.75 -0.7 829,752 - GFF2140 0.75 +0.8 829,752 - GFF2140 0.75 +0.0 829,763 + GFF2140 0.76 -0.2 829,883 + GFF2140 0.85 -0.1 829,883 + GFF2140 0.85 -0.1 829,883 + GFF2140 0.85 -0.8 829,883 + GFF2140 0.85 +0.3 829,884 - GFF2140 0.85 +0.1 829,896 - GFF2140 0.86 +0.5 830,000 + -0.2 830,000 + +0.0 830,000 + -1.0 830,000 + -0.2 830,000 + +0.0 830,001 - -1.1 830,001 - +1.5 830,001 - -0.1 830,001 - -0.7 830,001 - -0.2 830,034 + +0.0 830,034 + +0.4 830,035 - -0.3 830,220 + +0.2 830,220 + +0.3 830,499 + GFF2141 0.38 +0.1 830,500 - GFF2141 0.38 -0.2 830,645 + GFF2141 0.57 +0.0 830,646 - GFF2141 0.57 +0.2 831,057 - -1.3 831,057 - +0.2 831,057 - -0.3
Or see this region's nucleotide sequence