Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2131 and GFF2132 are separated by 272 nucleotides GFF2132 and GFF2133 are separated by 131 nucleotides GFF2133 and GFF2134 are separated by 102 nucleotides
GFF2131 - hypothetical protein, at 817,073 to 817,453
GFF2131
GFF2132 - hypothetical protein, at 817,726 to 817,971
GFF2132
GFF2133 - hypothetical protein, at 818,103 to 819,020
GFF2133
GFF2134 - Prophage integrase IntA, at 819,123 to 820,334
GFF2134
Position (kb) 818
819
820 Strain fitness (log2 ratio) -1
0
1 at 817.147 kb on - strand, within GFF2131 at 817.446 kb on + strand at 817.446 kb on + strand at 817.892 kb on + strand, within GFF2132 at 817.892 kb on + strand, within GFF2132 at 817.916 kb on + strand, within GFF2132 at 817.916 kb on + strand, within GFF2132 at 817.917 kb on - strand, within GFF2132 at 818.058 kb on + strand at 818.059 kb on - strand at 818.059 kb on - strand at 818.074 kb on + strand at 818.075 kb on - strand at 818.090 kb on + strand at 818.091 kb on - strand at 818.271 kb on + strand, within GFF2133 at 818.272 kb on - strand, within GFF2133 at 818.272 kb on - strand, within GFF2133 at 818.272 kb on - strand, within GFF2133 at 818.275 kb on + strand, within GFF2133 at 818.275 kb on + strand, within GFF2133 at 818.275 kb on + strand, within GFF2133 at 818.276 kb on - strand, within GFF2133 at 818.276 kb on - strand, within GFF2133 at 818.276 kb on - strand, within GFF2133 at 818.302 kb on - strand, within GFF2133 at 818.329 kb on - strand, within GFF2133 at 818.337 kb on + strand, within GFF2133 at 818.337 kb on + strand, within GFF2133 at 818.413 kb on + strand, within GFF2133 at 818.463 kb on + strand, within GFF2133 at 818.464 kb on - strand, within GFF2133 at 818.465 kb on + strand, within GFF2133 at 818.466 kb on - strand, within GFF2133 at 818.467 kb on + strand, within GFF2133 at 818.543 kb on + strand, within GFF2133 at 818.555 kb on + strand, within GFF2133 at 818.556 kb on - strand, within GFF2133 at 818.673 kb on + strand, within GFF2133 at 818.728 kb on - strand, within GFF2133 at 818.728 kb on - strand, within GFF2133 at 818.728 kb on - strand, within GFF2133 at 818.753 kb on + strand, within GFF2133 at 818.839 kb on + strand, within GFF2133 at 818.840 kb on - strand, within GFF2133 at 818.889 kb on + strand, within GFF2133 at 818.889 kb on + strand, within GFF2133 at 818.889 kb on + strand, within GFF2133 at 818.889 kb on + strand, within GFF2133 at 818.910 kb on + strand, within GFF2133 at 818.946 kb on + strand at 818.947 kb on - strand at 818.989 kb on + strand at 819.124 kb on + strand at 819.125 kb on - strand at 819.178 kb on + strand at 819.178 kb on + strand at 819.178 kb on + strand at 819.178 kb on + strand at 819.178 kb on + strand at 819.178 kb on + strand at 819.178 kb on + strand at 819.179 kb on - strand at 819.179 kb on - strand at 819.179 kb on - strand at 819.179 kb on - strand at 819.179 kb on - strand at 819.216 kb on + strand at 819.235 kb on + strand at 819.263 kb on + strand, within GFF2134 at 819.263 kb on + strand, within GFF2134 at 819.264 kb on - strand, within GFF2134 at 819.302 kb on - strand, within GFF2134 at 819.481 kb on - strand, within GFF2134 at 819.823 kb on - strand, within GFF2134 at 819.823 kb on - strand, within GFF2134 at 819.933 kb on - strand, within GFF2134 at 819.952 kb on + strand, within GFF2134 at 819.953 kb on - strand, within GFF2134 at 819.953 kb on - strand, within GFF2134 at 819.953 kb on - strand, within GFF2134 at 819.953 kb on - strand, within GFF2134
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 817,147 - GFF2131 0.19 -0.3 817,446 + +1.0 817,446 + -0.1 817,892 + GFF2132 0.67 -0.3 817,892 + GFF2132 0.67 +0.3 817,916 + GFF2132 0.77 -0.2 817,916 + GFF2132 0.77 +0.1 817,917 - GFF2132 0.78 +0.7 818,058 + -0.3 818,059 - +0.6 818,059 - +0.4 818,074 + -0.7 818,075 - -0.4 818,090 + -1.6 818,091 - -0.2 818,271 + GFF2133 0.18 +0.3 818,272 - GFF2133 0.18 +0.2 818,272 - GFF2133 0.18 -0.5 818,272 - GFF2133 0.18 -0.6 818,275 + GFF2133 0.19 +0.8 818,275 + GFF2133 0.19 -0.1 818,275 + GFF2133 0.19 +0.4 818,276 - GFF2133 0.19 -0.7 818,276 - GFF2133 0.19 -0.7 818,276 - GFF2133 0.19 -0.7 818,302 - GFF2133 0.22 -1.2 818,329 - GFF2133 0.25 +1.0 818,337 + GFF2133 0.25 +0.7 818,337 + GFF2133 0.25 -0.1 818,413 + GFF2133 0.34 +0.6 818,463 + GFF2133 0.39 +0.5 818,464 - GFF2133 0.39 -0.4 818,465 + GFF2133 0.39 -0.6 818,466 - GFF2133 0.40 +0.1 818,467 + GFF2133 0.40 +0.3 818,543 + GFF2133 0.48 -0.3 818,555 + GFF2133 0.49 +1.7 818,556 - GFF2133 0.49 -0.3 818,673 + GFF2133 0.62 +0.3 818,728 - GFF2133 0.68 +1.3 818,728 - GFF2133 0.68 +0.5 818,728 - GFF2133 0.68 -1.0 818,753 + GFF2133 0.71 +0.1 818,839 + GFF2133 0.80 +0.3 818,840 - GFF2133 0.80 -0.1 818,889 + GFF2133 0.86 -0.3 818,889 + GFF2133 0.86 -0.6 818,889 + GFF2133 0.86 +1.2 818,889 + GFF2133 0.86 -0.5 818,910 + GFF2133 0.88 +0.5 818,946 + -0.3 818,947 - +0.0 818,989 + -1.6 819,124 + -0.3 819,125 - -0.6 819,178 + -0.9 819,178 + +0.5 819,178 + -0.4 819,178 + +0.5 819,178 + -0.1 819,178 + -0.3 819,178 + -1.6 819,179 - +0.7 819,179 - -0.6 819,179 - -0.7 819,179 - +0.2 819,179 - -0.2 819,216 + +0.7 819,235 + +0.5 819,263 + GFF2134 0.12 +0.3 819,263 + GFF2134 0.12 +0.0 819,264 - GFF2134 0.12 -1.1 819,302 - GFF2134 0.15 -1.4 819,481 - GFF2134 0.30 -0.1 819,823 - GFF2134 0.58 +0.8 819,823 - GFF2134 0.58 +0.1 819,933 - GFF2134 0.67 +0.9 819,952 + GFF2134 0.68 -0.0 819,953 - GFF2134 0.68 +0.2 819,953 - GFF2134 0.68 -0.6 819,953 - GFF2134 0.68 -0.4 819,953 - GFF2134 0.68 -0.2
Or see this region's nucleotide sequence