Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2114 and GFF2115 are separated by 101 nucleotides GFF2115 and GFF2116 are separated by 168 nucleotides GFF2116 and GFF2117 are separated by 68 nucleotides GFF2117 and GFF2118 are separated by 226 nucleotides
GFF2114 - hypothetical protein, at 800,563 to 801,534
GFF2114
GFF2115 - hypothetical protein, at 801,636 to 802,607
GFF2115
GFF2116 - hypothetical protein, at 802,776 to 803,018
GFF2116
GFF2117 - hypothetical protein, at 803,087 to 803,236
GFF2117
GFF2118 - hypothetical protein, at 803,463 to 803,672
GFF2118
Position (kb) 801
802
803 Strain fitness (log2 ratio) -2
-1
0
1
2 at 800.702 kb on + strand, within GFF2114 at 800.702 kb on + strand, within GFF2114 at 800.703 kb on - strand, within GFF2114 at 800.703 kb on - strand, within GFF2114 at 800.783 kb on - strand, within GFF2114 at 800.802 kb on - strand, within GFF2114 at 800.821 kb on + strand, within GFF2114 at 800.846 kb on + strand, within GFF2114 at 800.846 kb on + strand, within GFF2114 at 800.846 kb on + strand, within GFF2114 at 800.846 kb on + strand, within GFF2114 at 800.846 kb on + strand, within GFF2114 at 800.847 kb on - strand, within GFF2114 at 800.957 kb on + strand, within GFF2114 at 800.958 kb on - strand, within GFF2114 at 800.958 kb on - strand, within GFF2114 at 800.958 kb on - strand, within GFF2114 at 800.958 kb on - strand, within GFF2114 at 800.958 kb on - strand, within GFF2114 at 800.961 kb on - strand, within GFF2114 at 800.975 kb on + strand, within GFF2114 at 800.975 kb on + strand, within GFF2114 at 800.975 kb on + strand, within GFF2114 at 800.976 kb on - strand, within GFF2114 at 800.976 kb on - strand, within GFF2114 at 800.976 kb on - strand, within GFF2114 at 801.038 kb on + strand, within GFF2114 at 801.039 kb on - strand, within GFF2114 at 801.041 kb on + strand, within GFF2114 at 801.041 kb on + strand, within GFF2114 at 801.041 kb on + strand, within GFF2114 at 801.042 kb on - strand, within GFF2114 at 801.356 kb on + strand, within GFF2114 at 801.414 kb on - strand, within GFF2114 at 801.435 kb on - strand, within GFF2114 at 801.502 kb on + strand at 801.502 kb on + strand at 801.594 kb on + strand at 801.594 kb on + strand at 801.594 kb on + strand at 801.594 kb on + strand at 801.594 kb on + strand at 801.595 kb on - strand at 801.595 kb on - strand at 801.638 kb on - strand at 801.638 kb on - strand at 801.638 kb on - strand at 801.718 kb on + strand at 801.718 kb on + strand at 801.718 kb on + strand at 801.718 kb on + strand at 801.718 kb on + strand at 801.719 kb on - strand at 801.719 kb on - strand at 801.719 kb on - strand at 801.719 kb on - strand at 801.719 kb on - strand at 802.078 kb on - strand, within GFF2115 at 802.144 kb on + strand, within GFF2115 at 802.178 kb on + strand, within GFF2115 at 802.178 kb on + strand, within GFF2115 at 802.178 kb on + strand, within GFF2115 at 802.178 kb on + strand, within GFF2115 at 802.178 kb on + strand, within GFF2115 at 802.178 kb on + strand, within GFF2115 at 802.178 kb on + strand, within GFF2115 at 802.179 kb on - strand, within GFF2115 at 802.179 kb on - strand, within GFF2115 at 802.180 kb on + strand, within GFF2115 at 802.180 kb on + strand, within GFF2115 at 802.180 kb on + strand, within GFF2115 at 802.181 kb on - strand, within GFF2115 at 802.181 kb on - strand, within GFF2115 at 802.181 kb on - strand, within GFF2115 at 802.227 kb on - strand, within GFF2115 at 802.442 kb on - strand, within GFF2115 at 802.514 kb on - strand at 802.514 kb on - strand at 802.534 kb on + strand at 802.535 kb on - strand at 802.590 kb on + strand at 802.590 kb on + strand at 802.590 kb on + strand at 802.591 kb on - strand at 802.591 kb on - strand at 802.591 kb on - strand at 802.591 kb on - strand at 802.591 kb on - strand at 802.592 kb on + strand at 802.592 kb on + strand at 802.592 kb on + strand at 802.592 kb on + strand at 802.593 kb on - strand at 802.593 kb on - strand at 802.593 kb on - strand at 802.593 kb on - strand at 802.593 kb on - strand at 802.625 kb on + strand at 802.627 kb on - strand at 802.684 kb on - strand at 802.685 kb on + strand at 802.685 kb on + strand at 802.685 kb on + strand at 802.685 kb on + strand at 802.709 kb on + strand at 802.709 kb on + strand at 802.715 kb on + strand at 802.715 kb on + strand at 802.715 kb on + strand at 802.716 kb on - strand at 802.747 kb on + strand at 802.747 kb on + strand at 802.748 kb on - strand at 802.748 kb on - strand at 802.777 kb on + strand at 802.892 kb on + strand, within GFF2116 at 802.892 kb on + strand, within GFF2116 at 802.893 kb on - strand, within GFF2116 at 802.893 kb on - strand, within GFF2116 at 802.893 kb on - strand, within GFF2116 at 802.893 kb on - strand, within GFF2116 at 803.050 kb on - strand at 803.239 kb on - strand at 803.239 kb on - strand at 803.239 kb on - strand at 803.285 kb on + strand at 803.286 kb on - strand at 803.338 kb on - strand at 803.542 kb on + strand, within GFF2118 at 803.542 kb on + strand, within GFF2118 at 803.543 kb on - strand, within GFF2118
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 800,702 + GFF2114 0.14 +0.8 800,702 + GFF2114 0.14 -0.3 800,703 - GFF2114 0.14 -0.2 800,703 - GFF2114 0.14 +0.6 800,783 - GFF2114 0.23 -0.2 800,802 - GFF2114 0.25 -0.1 800,821 + GFF2114 0.27 -1.2 800,846 + GFF2114 0.29 +0.8 800,846 + GFF2114 0.29 -0.6 800,846 + GFF2114 0.29 +0.7 800,846 + GFF2114 0.29 -0.7 800,846 + GFF2114 0.29 +1.1 800,847 - GFF2114 0.29 -0.3 800,957 + GFF2114 0.41 +0.1 800,958 - GFF2114 0.41 +0.0 800,958 - GFF2114 0.41 -0.2 800,958 - GFF2114 0.41 -0.5 800,958 - GFF2114 0.41 +0.1 800,958 - GFF2114 0.41 -0.4 800,961 - GFF2114 0.41 -0.6 800,975 + GFF2114 0.42 +2.4 800,975 + GFF2114 0.42 -0.1 800,975 + GFF2114 0.42 -0.7 800,976 - GFF2114 0.42 -0.8 800,976 - GFF2114 0.42 -1.0 800,976 - GFF2114 0.42 +0.2 801,038 + GFF2114 0.49 +0.4 801,039 - GFF2114 0.49 -0.5 801,041 + GFF2114 0.49 +0.0 801,041 + GFF2114 0.49 -0.1 801,041 + GFF2114 0.49 -0.1 801,042 - GFF2114 0.49 +0.7 801,356 + GFF2114 0.82 -0.0 801,414 - GFF2114 0.88 +0.0 801,435 - GFF2114 0.90 -0.1 801,502 + +0.1 801,502 + -0.5 801,594 + -1.0 801,594 + -0.4 801,594 + +0.1 801,594 + +0.4 801,594 + -1.8 801,595 - +1.2 801,595 - -0.0 801,638 - -0.8 801,638 - +0.2 801,638 - +0.4 801,718 + -0.4 801,718 + -0.0 801,718 + -0.1 801,718 + +0.5 801,718 + -0.0 801,719 - -1.3 801,719 - -1.3 801,719 - -1.4 801,719 - +0.7 801,719 - +0.8 802,078 - GFF2115 0.45 -0.2 802,144 + GFF2115 0.52 -1.2 802,178 + GFF2115 0.56 +0.3 802,178 + GFF2115 0.56 +0.4 802,178 + GFF2115 0.56 -0.2 802,178 + GFF2115 0.56 +0.8 802,178 + GFF2115 0.56 +1.0 802,178 + GFF2115 0.56 -0.2 802,178 + GFF2115 0.56 -0.2 802,179 - GFF2115 0.56 -0.5 802,179 - GFF2115 0.56 +1.2 802,180 + GFF2115 0.56 -0.0 802,180 + GFF2115 0.56 +0.5 802,180 + GFF2115 0.56 -0.1 802,181 - GFF2115 0.56 +0.0 802,181 - GFF2115 0.56 +0.3 802,181 - GFF2115 0.56 +0.6 802,227 - GFF2115 0.61 +0.2 802,442 - GFF2115 0.83 +0.2 802,514 - -0.2 802,514 - -0.5 802,534 + -0.2 802,535 - -0.4 802,590 + -0.3 802,590 + -1.3 802,590 + +0.5 802,591 - -0.5 802,591 - +0.2 802,591 - +0.4 802,591 - +1.5 802,591 - -0.2 802,592 + -0.2 802,592 + -1.0 802,592 + +0.2 802,592 + -0.3 802,593 - +0.7 802,593 - +0.5 802,593 - -0.5 802,593 - -0.2 802,593 - +0.7 802,625 + +0.3 802,627 - +0.1 802,684 - -0.9 802,685 + -0.0 802,685 + +0.0 802,685 + -0.9 802,685 + +0.5 802,709 + +0.3 802,709 + +1.2 802,715 + -0.9 802,715 + +0.0 802,715 + +0.1 802,716 - -0.3 802,747 + -1.3 802,747 + -0.0 802,748 - +0.6 802,748 - +0.2 802,777 + +0.7 802,892 + GFF2116 0.48 -0.0 802,892 + GFF2116 0.48 -0.7 802,893 - GFF2116 0.48 -0.1 802,893 - GFF2116 0.48 +0.6 802,893 - GFF2116 0.48 -0.1 802,893 - GFF2116 0.48 -0.2 803,050 - -0.5 803,239 - -0.4 803,239 - -1.7 803,239 - +0.8 803,285 + +0.5 803,286 - +0.0 803,338 - +1.0 803,542 + GFF2118 0.38 +0.0 803,542 + GFF2118 0.38 -0.5 803,543 - GFF2118 0.38 +0.1
Or see this region's nucleotide sequence