Strain Fitness in Xanthobacter sp. DMC5 around GFF2034

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2033 and GFF2034 are separated by 135 nucleotidesGFF2034 and GFF2035 are separated by 62 nucleotides GFF2033 - hypothetical protein, at 706,189 to 707,061 GFF2033 GFF2034 - hypothetical protein, at 707,197 to 708,234 GFF2034 GFF2035 - Gamma-glutamylputrescine oxidoreductase, at 708,297 to 709,601 GFF2035 Position (kb) 707 708 709Strain fitness (log2 ratio) -1 0 1 2at 706.304 kb on + strand, within GFF2033at 706.304 kb on + strand, within GFF2033at 706.305 kb on - strand, within GFF2033at 706.305 kb on - strand, within GFF2033at 706.343 kb on + strand, within GFF2033at 706.343 kb on + strand, within GFF2033at 706.343 kb on + strand, within GFF2033at 706.343 kb on + strand, within GFF2033at 706.344 kb on - strand, within GFF2033at 706.344 kb on - strand, within GFF2033at 706.344 kb on - strand, within GFF2033at 706.344 kb on - strand, within GFF2033at 706.344 kb on - strand, within GFF2033at 706.379 kb on + strand, within GFF2033at 706.379 kb on + strand, within GFF2033at 706.379 kb on + strand, within GFF2033at 706.379 kb on + strand, within GFF2033at 706.379 kb on + strand, within GFF2033at 706.380 kb on - strand, within GFF2033at 706.466 kb on + strand, within GFF2033at 706.466 kb on + strand, within GFF2033at 706.466 kb on + strand, within GFF2033at 706.536 kb on - strand, within GFF2033at 706.691 kb on + strand, within GFF2033at 706.691 kb on + strand, within GFF2033at 706.691 kb on + strand, within GFF2033at 706.692 kb on - strand, within GFF2033at 706.692 kb on - strand, within GFF2033at 706.781 kb on + strand, within GFF2033at 706.781 kb on + strand, within GFF2033at 706.781 kb on + strand, within GFF2033at 706.781 kb on + strand, within GFF2033at 706.781 kb on + strand, within GFF2033at 706.781 kb on + strand, within GFF2033at 706.782 kb on - strand, within GFF2033at 706.782 kb on - strand, within GFF2033at 706.862 kb on + strand, within GFF2033at 706.889 kb on + strand, within GFF2033at 706.889 kb on + strand, within GFF2033at 706.889 kb on + strand, within GFF2033at 707.198 kb on + strandat 707.198 kb on + strandat 707.198 kb on + strandat 707.198 kb on + strandat 707.198 kb on + strandat 707.379 kb on + strand, within GFF2034at 707.379 kb on + strand, within GFF2034at 707.379 kb on + strand, within GFF2034at 707.380 kb on - strand, within GFF2034at 707.380 kb on - strand, within GFF2034at 707.380 kb on - strand, within GFF2034at 707.380 kb on - strand, within GFF2034at 707.381 kb on + strand, within GFF2034at 707.381 kb on + strand, within GFF2034at 707.381 kb on + strand, within GFF2034at 707.383 kb on - strand, within GFF2034at 707.435 kb on + strand, within GFF2034at 707.435 kb on + strand, within GFF2034at 707.435 kb on + strand, within GFF2034at 707.436 kb on - strand, within GFF2034at 707.634 kb on + strand, within GFF2034at 707.634 kb on + strand, within GFF2034at 707.634 kb on + strand, within GFF2034at 707.635 kb on - strand, within GFF2034at 707.688 kb on - strand, within GFF2034at 707.688 kb on - strand, within GFF2034at 707.688 kb on - strand, within GFF2034at 707.840 kb on + strand, within GFF2034at 707.841 kb on - strand, within GFF2034at 707.858 kb on + strand, within GFF2034at 707.858 kb on + strand, within GFF2034at 707.858 kb on + strand, within GFF2034at 707.859 kb on - strand, within GFF2034at 707.879 kb on + strand, within GFF2034at 707.891 kb on + strand, within GFF2034at 708.325 kb on + strandat 708.325 kb on + strandat 708.325 kb on + strandat 708.326 kb on - strandat 708.326 kb on - strandat 708.326 kb on - strandat 708.367 kb on + strandat 708.367 kb on + strandat 708.367 kb on + strandat 708.367 kb on + strandat 708.368 kb on - strandat 708.485 kb on + strand, within GFF2035at 708.486 kb on - strand, within GFF2035at 708.486 kb on - strand, within GFF2035at 708.487 kb on + strand, within GFF2035at 708.488 kb on - strand, within GFF2035at 708.499 kb on + strand, within GFF2035at 708.500 kb on - strand, within GFF2035at 708.500 kb on - strand, within GFF2035at 708.500 kb on - strand, within GFF2035at 708.583 kb on + strand, within GFF2035at 708.682 kb on + strand, within GFF2035at 708.704 kb on + strand, within GFF2035at 708.739 kb on + strand, within GFF2035at 708.739 kb on + strand, within GFF2035at 708.739 kb on + strand, within GFF2035at 708.740 kb on - strand, within GFF2035at 708.740 kb on - strand, within GFF2035at 709.021 kb on + strand, within GFF2035at 709.021 kb on + strand, within GFF2035at 709.021 kb on + strand, within GFF2035at 709.225 kb on + strand, within GFF2035

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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706,304 + GFF2033 0.13 -0.1
706,304 + GFF2033 0.13 +0.9
706,305 - GFF2033 0.13 +0.6
706,305 - GFF2033 0.13 +0.0
706,343 + GFF2033 0.18 -0.8
706,343 + GFF2033 0.18 +0.3
706,343 + GFF2033 0.18 -0.3
706,343 + GFF2033 0.18 +0.4
706,344 - GFF2033 0.18 +0.5
706,344 - GFF2033 0.18 -0.1
706,344 - GFF2033 0.18 +0.1
706,344 - GFF2033 0.18 +0.5
706,344 - GFF2033 0.18 +0.4
706,379 + GFF2033 0.22 +0.0
706,379 + GFF2033 0.22 +0.4
706,379 + GFF2033 0.22 -0.7
706,379 + GFF2033 0.22 +0.5
706,379 + GFF2033 0.22 -1.0
706,380 - GFF2033 0.22 +0.3
706,466 + GFF2033 0.32 -0.7
706,466 + GFF2033 0.32 -0.7
706,466 + GFF2033 0.32 -0.0
706,536 - GFF2033 0.40 -0.1
706,691 + GFF2033 0.58 +0.0
706,691 + GFF2033 0.58 -0.5
706,691 + GFF2033 0.58 +1.1
706,692 - GFF2033 0.58 -0.6
706,692 - GFF2033 0.58 +1.1
706,781 + GFF2033 0.68 +0.5
706,781 + GFF2033 0.68 -1.5
706,781 + GFF2033 0.68 +0.3
706,781 + GFF2033 0.68 -0.1
706,781 + GFF2033 0.68 +0.5
706,781 + GFF2033 0.68 -0.1
706,782 - GFF2033 0.68 +0.7
706,782 - GFF2033 0.68 +0.5
706,862 + GFF2033 0.77 +0.0
706,889 + GFF2033 0.80 -0.5
706,889 + GFF2033 0.80 -0.2
706,889 + GFF2033 0.80 -0.2
707,198 + +0.4
707,198 + -0.7
707,198 + -0.1
707,198 + +0.3
707,198 + -1.2
707,379 + GFF2034 0.18 +0.4
707,379 + GFF2034 0.18 +0.5
707,379 + GFF2034 0.18 -0.7
707,380 - GFF2034 0.18 +0.3
707,380 - GFF2034 0.18 +0.0
707,380 - GFF2034 0.18 +0.7
707,380 - GFF2034 0.18 +0.5
707,381 + GFF2034 0.18 -0.4
707,381 + GFF2034 0.18 +0.5
707,381 + GFF2034 0.18 +0.1
707,383 - GFF2034 0.18 +2.2
707,435 + GFF2034 0.23 +0.2
707,435 + GFF2034 0.23 -0.6
707,435 + GFF2034 0.23 -0.7
707,436 - GFF2034 0.23 +0.3
707,634 + GFF2034 0.42 +0.6
707,634 + GFF2034 0.42 -1.6
707,634 + GFF2034 0.42 +1.1
707,635 - GFF2034 0.42 +0.3
707,688 - GFF2034 0.47 +0.6
707,688 - GFF2034 0.47 +0.3
707,688 - GFF2034 0.47 +0.1
707,840 + GFF2034 0.62 -0.7
707,841 - GFF2034 0.62 -0.6
707,858 + GFF2034 0.64 +0.5
707,858 + GFF2034 0.64 -0.1
707,858 + GFF2034 0.64 -0.7
707,859 - GFF2034 0.64 -0.2
707,879 + GFF2034 0.66 +0.4
707,891 + GFF2034 0.67 -0.2
708,325 + -0.2
708,325 + -0.4
708,325 + +0.1
708,326 - +0.1
708,326 - -0.1
708,326 - -0.5
708,367 + -0.0
708,367 + +0.0
708,367 + +0.8
708,367 + +0.4
708,368 - -0.2
708,485 + GFF2035 0.14 -0.4
708,486 - GFF2035 0.14 -0.3
708,486 - GFF2035 0.14 -0.2
708,487 + GFF2035 0.15 -0.3
708,488 - GFF2035 0.15 -0.0
708,499 + GFF2035 0.15 +0.6
708,500 - GFF2035 0.16 +0.1
708,500 - GFF2035 0.16 +0.1
708,500 - GFF2035 0.16 -1.0
708,583 + GFF2035 0.22 +0.5
708,682 + GFF2035 0.30 -0.1
708,704 + GFF2035 0.31 -0.0
708,739 + GFF2035 0.34 +0.4
708,739 + GFF2035 0.34 -0.0
708,739 + GFF2035 0.34 -0.5
708,740 - GFF2035 0.34 -0.4
708,740 - GFF2035 0.34 +0.3
709,021 + GFF2035 0.55 +0.1
709,021 + GFF2035 0.55 +0.4
709,021 + GFF2035 0.55 +0.6
709,225 + GFF2035 0.71 -0.0

Or see this region's nucleotide sequence