Strain Fitness in Xanthobacter sp. DMC5 around GFF2024

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2023 and GFF2024 overlap by 4 nucleotidesGFF2024 and GFF2025 are separated by 114 nucleotides GFF2023 - hypothetical protein, at 695,359 to 696,873 GFF2023 GFF2024 - hypothetical protein, at 696,870 to 697,937 GFF2024 GFF2025 - Sensor histidine kinase RegB, at 698,052 to 699,359 GFF2025 Position (kb) 696 697 698Strain fitness (log2 ratio) -2 -1 0 1 2at 696.079 kb on + strand, within GFF2023at 696.080 kb on - strand, within GFF2023at 696.082 kb on + strand, within GFF2023at 696.082 kb on + strand, within GFF2023at 696.082 kb on + strand, within GFF2023at 696.328 kb on + strand, within GFF2023at 696.328 kb on + strand, within GFF2023at 696.328 kb on + strand, within GFF2023at 696.343 kb on + strand, within GFF2023at 696.343 kb on + strand, within GFF2023at 696.343 kb on + strand, within GFF2023at 696.343 kb on + strand, within GFF2023at 696.343 kb on + strand, within GFF2023at 696.344 kb on - strand, within GFF2023at 696.344 kb on - strand, within GFF2023at 696.344 kb on - strand, within GFF2023at 696.344 kb on - strand, within GFF2023at 696.344 kb on - strand, within GFF2023at 696.349 kb on + strand, within GFF2023at 696.350 kb on - strand, within GFF2023at 696.350 kb on - strand, within GFF2023at 696.350 kb on - strand, within GFF2023at 696.350 kb on - strand, within GFF2023at 696.350 kb on - strand, within GFF2023at 696.350 kb on - strand, within GFF2023at 696.377 kb on - strand, within GFF2023at 696.377 kb on - strand, within GFF2023at 696.377 kb on - strand, within GFF2023at 696.418 kb on + strand, within GFF2023at 696.419 kb on - strand, within GFF2023at 696.419 kb on - strand, within GFF2023at 696.419 kb on - strand, within GFF2023at 696.568 kb on + strand, within GFF2023at 696.635 kb on - strand, within GFF2023at 696.715 kb on + strand, within GFF2023at 697.017 kb on + strand, within GFF2024at 697.017 kb on + strand, within GFF2024at 697.047 kb on + strand, within GFF2024at 697.062 kb on + strand, within GFF2024at 697.062 kb on + strand, within GFF2024at 697.063 kb on - strand, within GFF2024at 697.063 kb on - strand, within GFF2024at 697.146 kb on + strand, within GFF2024at 697.146 kb on + strand, within GFF2024at 697.146 kb on + strand, within GFF2024at 697.146 kb on + strand, within GFF2024at 697.147 kb on - strand, within GFF2024at 697.147 kb on - strand, within GFF2024at 697.147 kb on - strand, within GFF2024at 697.148 kb on + strand, within GFF2024at 697.148 kb on + strand, within GFF2024at 697.149 kb on - strand, within GFF2024at 697.149 kb on - strand, within GFF2024at 697.155 kb on + strand, within GFF2024at 697.155 kb on + strand, within GFF2024at 697.156 kb on - strand, within GFF2024at 697.236 kb on + strand, within GFF2024at 697.237 kb on - strand, within GFF2024at 697.237 kb on - strand, within GFF2024at 697.248 kb on + strand, within GFF2024at 697.248 kb on + strand, within GFF2024at 697.248 kb on + strand, within GFF2024at 697.248 kb on + strand, within GFF2024at 697.248 kb on + strand, within GFF2024at 697.249 kb on - strand, within GFF2024at 697.249 kb on - strand, within GFF2024at 697.249 kb on - strand, within GFF2024at 697.249 kb on - strand, within GFF2024at 697.435 kb on - strand, within GFF2024at 697.815 kb on + strand, within GFF2024at 697.816 kb on - strand, within GFF2024at 697.872 kb on + strandat 697.872 kb on + strandat 697.872 kb on + strandat 697.873 kb on - strandat 697.873 kb on - strandat 697.873 kb on - strandat 697.873 kb on - strandat 697.953 kb on + strandat 697.953 kb on + strandat 697.953 kb on + strandat 698.108 kb on - strandat 698.108 kb on - strandat 698.309 kb on - strand, within GFF2025at 698.331 kb on + strand, within GFF2025at 698.332 kb on - strand, within GFF2025at 698.332 kb on - strand, within GFF2025at 698.332 kb on - strand, within GFF2025at 698.471 kb on - strand, within GFF2025at 698.472 kb on + strand, within GFF2025at 698.473 kb on - strand, within GFF2025at 698.861 kb on + strand, within GFF2025at 698.861 kb on + strand, within GFF2025at 698.862 kb on - strand, within GFF2025at 698.862 kb on - strand, within GFF2025at 698.862 kb on - strand, within GFF2025

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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696,079 + GFF2023 0.48 +0.2
696,080 - GFF2023 0.48 -0.2
696,082 + GFF2023 0.48 -0.4
696,082 + GFF2023 0.48 +0.3
696,082 + GFF2023 0.48 -1.0
696,328 + GFF2023 0.64 -0.4
696,328 + GFF2023 0.64 +1.0
696,328 + GFF2023 0.64 -0.3
696,343 + GFF2023 0.65 -1.0
696,343 + GFF2023 0.65 -0.4
696,343 + GFF2023 0.65 -0.3
696,343 + GFF2023 0.65 +1.1
696,343 + GFF2023 0.65 -0.9
696,344 - GFF2023 0.65 +0.5
696,344 - GFF2023 0.65 +0.1
696,344 - GFF2023 0.65 +0.8
696,344 - GFF2023 0.65 -0.9
696,344 - GFF2023 0.65 -1.1
696,349 + GFF2023 0.65 -0.4
696,350 - GFF2023 0.65 +0.0
696,350 - GFF2023 0.65 -0.7
696,350 - GFF2023 0.65 -0.2
696,350 - GFF2023 0.65 +0.6
696,350 - GFF2023 0.65 +0.7
696,350 - GFF2023 0.65 -0.5
696,377 - GFF2023 0.67 +0.0
696,377 - GFF2023 0.67 -0.3
696,377 - GFF2023 0.67 -0.6
696,418 + GFF2023 0.70 +0.2
696,419 - GFF2023 0.70 +0.5
696,419 - GFF2023 0.70 -0.2
696,419 - GFF2023 0.70 -0.0
696,568 + GFF2023 0.80 +0.1
696,635 - GFF2023 0.84 -0.0
696,715 + GFF2023 0.90 +0.5
697,017 + GFF2024 0.14 -0.7
697,017 + GFF2024 0.14 -0.2
697,047 + GFF2024 0.17 -0.1
697,062 + GFF2024 0.18 -0.7
697,062 + GFF2024 0.18 -0.7
697,063 - GFF2024 0.18 -0.0
697,063 - GFF2024 0.18 -0.6
697,146 + GFF2024 0.26 +0.8
697,146 + GFF2024 0.26 -0.2
697,146 + GFF2024 0.26 +0.3
697,146 + GFF2024 0.26 -0.2
697,147 - GFF2024 0.26 -0.1
697,147 - GFF2024 0.26 +0.7
697,147 - GFF2024 0.26 -0.1
697,148 + GFF2024 0.26 +0.3
697,148 + GFF2024 0.26 +0.9
697,149 - GFF2024 0.26 -1.8
697,149 - GFF2024 0.26 -0.0
697,155 + GFF2024 0.27 -0.5
697,155 + GFF2024 0.27 +0.8
697,156 - GFF2024 0.27 +1.3
697,236 + GFF2024 0.34 +1.0
697,237 - GFF2024 0.34 -1.0
697,237 - GFF2024 0.34 -0.3
697,248 + GFF2024 0.35 -0.7
697,248 + GFF2024 0.35 +0.7
697,248 + GFF2024 0.35 -1.3
697,248 + GFF2024 0.35 +0.4
697,248 + GFF2024 0.35 +0.2
697,249 - GFF2024 0.35 -0.8
697,249 - GFF2024 0.35 +0.5
697,249 - GFF2024 0.35 -0.2
697,249 - GFF2024 0.35 -0.4
697,435 - GFF2024 0.53 +0.4
697,815 + GFF2024 0.88 +0.2
697,816 - GFF2024 0.89 +0.2
697,872 + -0.0
697,872 + +0.5
697,872 + +1.0
697,873 - -0.5
697,873 - -2.7
697,873 - +0.4
697,873 - +0.5
697,953 + +1.8
697,953 + +0.8
697,953 + +0.2
698,108 - +0.0
698,108 - -1.1
698,309 - GFF2025 0.20 -0.8
698,331 + GFF2025 0.21 +0.9
698,332 - GFF2025 0.21 -0.3
698,332 - GFF2025 0.21 -0.5
698,332 - GFF2025 0.21 -0.3
698,471 - GFF2025 0.32 -0.1
698,472 + GFF2025 0.32 -1.0
698,473 - GFF2025 0.32 +0.0
698,861 + GFF2025 0.62 -0.3
698,861 + GFF2025 0.62 -1.1
698,862 - GFF2025 0.62 +0.2
698,862 - GFF2025 0.62 -0.2
698,862 - GFF2025 0.62 -0.2

Or see this region's nucleotide sequence