Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1991 and GFF1992 are separated by 4 nucleotides GFF1992 and GFF1993 are separated by 118 nucleotides GFF1993 and GFF1994 are separated by 53 nucleotides
GFF1991 - 3'-5' exonuclease DinG, at 657,016 to 659,190
GFF1991
GFF1992 - Pyrethroid hydrolase, at 659,195 to 659,929
GFF1992
GFF1993 - hypothetical protein, at 660,048 to 660,551
GFF1993
GFF1994 - (S)-mandelate dehydrogenase, at 660,605 to 661,900
GFF1994
Position (kb) 659
660 Strain fitness (log2 ratio) -2
-1
0
1 at 658.541 kb on - strand, within GFF1991 at 658.541 kb on - strand, within GFF1991 at 658.616 kb on - strand, within GFF1991 at 658.617 kb on + strand, within GFF1991 at 658.618 kb on - strand, within GFF1991 at 658.622 kb on + strand, within GFF1991 at 659.167 kb on + strand at 659.167 kb on + strand at 659.167 kb on + strand at 659.168 kb on - strand at 659.168 kb on - strand at 659.168 kb on - strand at 659.185 kb on + strand at 659.325 kb on + strand, within GFF1992 at 659.326 kb on - strand, within GFF1992 at 659.326 kb on - strand, within GFF1992 at 659.326 kb on - strand, within GFF1992 at 659.349 kb on + strand, within GFF1992 at 659.349 kb on + strand, within GFF1992 at 659.349 kb on + strand, within GFF1992 at 659.350 kb on - strand, within GFF1992 at 659.404 kb on - strand, within GFF1992 at 659.607 kb on + strand, within GFF1992 at 659.607 kb on + strand, within GFF1992 at 659.608 kb on - strand, within GFF1992 at 660.015 kb on - strand at 660.027 kb on + strand at 660.094 kb on - strand at 660.094 kb on - strand at 660.465 kb on - strand, within GFF1993 at 660.503 kb on + strand at 660.620 kb on + strand at 660.726 kb on + strand at 660.726 kb on + strand at 660.893 kb on + strand, within GFF1994
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 658,541 - GFF1991 0.70 -0.5 658,541 - GFF1991 0.70 -1.0 658,616 - GFF1991 0.74 -0.6 658,617 + GFF1991 0.74 -0.8 658,618 - GFF1991 0.74 -0.0 658,622 + GFF1991 0.74 -0.2 659,167 + +0.5 659,167 + -0.6 659,167 + +0.2 659,168 - -0.9 659,168 - -0.0 659,168 - -0.1 659,185 + +0.1 659,325 + GFF1992 0.18 +0.1 659,326 - GFF1992 0.18 -0.1 659,326 - GFF1992 0.18 +0.1 659,326 - GFF1992 0.18 +0.4 659,349 + GFF1992 0.21 -1.8 659,349 + GFF1992 0.21 -0.3 659,349 + GFF1992 0.21 -1.0 659,350 - GFF1992 0.21 +0.4 659,404 - GFF1992 0.28 +0.6 659,607 + GFF1992 0.56 +0.4 659,607 + GFF1992 0.56 -0.5 659,608 - GFF1992 0.56 -0.3 660,015 - +0.9 660,027 + -2.4 660,094 - +0.2 660,094 - +1.3 660,465 - GFF1993 0.83 -1.0 660,503 + +0.0 660,620 + -0.3 660,726 + +0.4 660,726 + -2.0 660,893 + GFF1994 0.22 -0.2
Or see this region's nucleotide sequence