Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1968 and GFF1969 are separated by 4 nucleotides GFF1969 and GFF1970 are separated by 77 nucleotides
GFF1968 - Mycocerosic acid synthase-like polyketide synthase, at 627,081 to 628,121
GFF1968
GFF1969 - hypothetical protein, at 628,126 to 628,509
GFF1969
GFF1970 - C4-dicarboxylate transport protein, at 628,587 to 629,942
GFF1970
Position (kb) 628
629 Strain fitness (log2 ratio) -1
0
1 at 627.175 kb on - strand at 627.303 kb on + strand, within GFF1968 at 627.304 kb on - strand, within GFF1968 at 627.304 kb on - strand, within GFF1968 at 627.304 kb on - strand, within GFF1968 at 627.807 kb on + strand, within GFF1968 at 627.808 kb on - strand, within GFF1968 at 627.808 kb on - strand, within GFF1968 at 627.808 kb on - strand, within GFF1968 at 627.808 kb on - strand, within GFF1968 at 627.900 kb on + strand, within GFF1968 at 627.900 kb on + strand, within GFF1968 at 627.901 kb on - strand, within GFF1968 at 627.918 kb on + strand, within GFF1968 at 627.918 kb on + strand, within GFF1968 at 627.918 kb on + strand, within GFF1968 at 627.918 kb on + strand, within GFF1968 at 627.919 kb on - strand, within GFF1968 at 627.919 kb on - strand, within GFF1968 at 627.919 kb on - strand, within GFF1968 at 628.039 kb on - strand at 628.065 kb on + strand at 628.066 kb on - strand at 628.159 kb on + strand at 628.160 kb on - strand at 628.303 kb on + strand, within GFF1969 at 628.304 kb on - strand, within GFF1969 at 628.304 kb on - strand, within GFF1969 at 628.304 kb on - strand, within GFF1969 at 628.515 kb on + strand at 628.641 kb on + strand at 628.641 kb on + strand at 628.641 kb on + strand at 628.642 kb on - strand at 628.686 kb on + strand at 628.686 kb on + strand at 628.784 kb on - strand, within GFF1970 at 628.784 kb on - strand, within GFF1970 at 628.852 kb on - strand, within GFF1970 at 628.971 kb on + strand, within GFF1970 at 629.083 kb on - strand, within GFF1970 at 629.097 kb on + strand, within GFF1970 at 629.244 kb on + strand, within GFF1970 at 629.244 kb on + strand, within GFF1970 at 629.244 kb on + strand, within GFF1970 at 629.244 kb on + strand, within GFF1970 at 629.377 kb on - strand, within GFF1970 at 629.377 kb on - strand, within GFF1970
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 627,175 - -1.1 627,303 + GFF1968 0.21 -0.2 627,304 - GFF1968 0.21 +0.7 627,304 - GFF1968 0.21 -0.6 627,304 - GFF1968 0.21 -0.1 627,807 + GFF1968 0.70 -0.4 627,808 - GFF1968 0.70 -0.1 627,808 - GFF1968 0.70 -0.2 627,808 - GFF1968 0.70 -0.0 627,808 - GFF1968 0.70 +1.2 627,900 + GFF1968 0.79 +0.1 627,900 + GFF1968 0.79 -0.6 627,901 - GFF1968 0.79 -0.3 627,918 + GFF1968 0.80 -0.0 627,918 + GFF1968 0.80 +0.6 627,918 + GFF1968 0.80 +0.4 627,918 + GFF1968 0.80 +1.0 627,919 - GFF1968 0.80 -0.5 627,919 - GFF1968 0.80 -0.5 627,919 - GFF1968 0.80 -0.6 628,039 - -0.5 628,065 + -0.0 628,066 - +0.3 628,159 + +0.4 628,160 - +0.7 628,303 + GFF1969 0.46 -0.5 628,304 - GFF1969 0.46 -0.5 628,304 - GFF1969 0.46 +1.4 628,304 - GFF1969 0.46 -0.6 628,515 + +0.0 628,641 + +0.7 628,641 + -0.3 628,641 + -0.2 628,642 - -0.2 628,686 + +0.6 628,686 + +1.0 628,784 - GFF1970 0.15 -0.4 628,784 - GFF1970 0.15 -0.0 628,852 - GFF1970 0.20 -0.3 628,971 + GFF1970 0.28 -0.7 629,083 - GFF1970 0.37 +0.3 629,097 + GFF1970 0.38 -0.5 629,244 + GFF1970 0.48 -0.2 629,244 + GFF1970 0.48 -0.1 629,244 + GFF1970 0.48 +1.5 629,244 + GFF1970 0.48 -0.1 629,377 - GFF1970 0.58 -0.6 629,377 - GFF1970 0.58 +1.3
Or see this region's nucleotide sequence