Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1955 and GFF1956 are separated by 102 nucleotides GFF1956 and GFF1957 are separated by 47 nucleotides GFF1957 and GFF1958 are separated by 318 nucleotides
GFF1955 - Glyoxylate carboligase, at 610,365 to 612,140
GFF1955
GFF1956 - Hydroxypyruvate isomerase, at 612,243 to 613,022
GFF1956
GFF1957 - 2-hydroxy-3-oxopropionate reductase, at 613,070 to 613,957
GFF1957
GFF1958 - Pyruvate kinase, at 614,276 to 615,793
GFF1958
Position (kb) 613
614 Strain fitness (log2 ratio) -1
0
1 at 612.138 kb on + strand at 612.138 kb on + strand at 612.161 kb on + strand at 612.161 kb on + strand at 612.343 kb on - strand, within GFF1956 at 612.396 kb on + strand, within GFF1956 at 612.396 kb on + strand, within GFF1956 at 612.396 kb on + strand, within GFF1956 at 612.397 kb on - strand, within GFF1956 at 612.397 kb on - strand, within GFF1956 at 612.397 kb on - strand, within GFF1956 at 612.397 kb on - strand, within GFF1956 at 612.519 kb on + strand, within GFF1956 at 612.592 kb on - strand, within GFF1956 at 612.780 kb on + strand, within GFF1956 at 612.780 kb on + strand, within GFF1956 at 612.781 kb on - strand, within GFF1956 at 612.940 kb on - strand, within GFF1956 at 612.964 kb on - strand at 612.964 kb on - strand at 613.155 kb on - strand at 613.242 kb on - strand, within GFF1957 at 613.409 kb on + strand, within GFF1957 at 613.409 kb on + strand, within GFF1957 at 613.410 kb on - strand, within GFF1957 at 613.410 kb on - strand, within GFF1957 at 614.196 kb on - strand at 614.202 kb on - strand at 614.202 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 612,138 + -0.4 612,138 + -0.1 612,161 + -0.1 612,161 + -0.4 612,343 - GFF1956 0.13 +0.8 612,396 + GFF1956 0.20 +0.4 612,396 + GFF1956 0.20 -0.7 612,396 + GFF1956 0.20 -0.3 612,397 - GFF1956 0.20 -0.4 612,397 - GFF1956 0.20 +0.2 612,397 - GFF1956 0.20 -0.9 612,397 - GFF1956 0.20 +0.4 612,519 + GFF1956 0.35 +0.7 612,592 - GFF1956 0.45 -0.5 612,780 + GFF1956 0.69 +1.2 612,780 + GFF1956 0.69 -0.8 612,781 - GFF1956 0.69 +0.1 612,940 - GFF1956 0.89 +0.2 612,964 - -0.3 612,964 - -0.7 613,155 - -0.4 613,242 - GFF1957 0.19 +0.2 613,409 + GFF1957 0.38 +0.4 613,409 + GFF1957 0.38 +0.5 613,410 - GFF1957 0.38 +0.0 613,410 - GFF1957 0.38 -1.2 614,196 - -0.3 614,202 - -0.2 614,202 - -0.9
Or see this region's nucleotide sequence