Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1951 and GFF1952 are separated by 194 nucleotides GFF1952 and GFF1953 are separated by 27 nucleotides
GFF1951 - Peroxiredoxin, at 606,391 to 607,029
GFF1951
GFF1952 - hypothetical protein, at 607,224 to 608,330
GFF1952
GFF1953 - Nicotinate phosphoribosyltransferase, at 608,358 to 609,650
GFF1953
Position (kb) 607
608
609 Strain fitness (log2 ratio) -1
0
1
2 at 606.284 kb on + strand at 606.611 kb on + strand, within GFF1951 at 606.612 kb on - strand, within GFF1951 at 606.612 kb on - strand, within GFF1951 at 606.704 kb on + strand, within GFF1951 at 607.208 kb on + strand at 607.393 kb on - strand, within GFF1952 at 607.461 kb on + strand, within GFF1952 at 607.461 kb on + strand, within GFF1952 at 607.462 kb on - strand, within GFF1952 at 607.603 kb on - strand, within GFF1952 at 607.782 kb on + strand, within GFF1952 at 607.782 kb on + strand, within GFF1952 at 607.783 kb on - strand, within GFF1952 at 607.783 kb on - strand, within GFF1952 at 607.783 kb on - strand, within GFF1952 at 607.845 kb on + strand, within GFF1952 at 607.846 kb on - strand, within GFF1952 at 607.846 kb on - strand, within GFF1952 at 607.875 kb on + strand, within GFF1952 at 607.875 kb on + strand, within GFF1952 at 608.090 kb on + strand, within GFF1952 at 608.090 kb on + strand, within GFF1952 at 608.091 kb on - strand, within GFF1952 at 608.143 kb on - strand, within GFF1952 at 608.143 kb on - strand, within GFF1952 at 608.143 kb on - strand, within GFF1952 at 608.143 kb on - strand, within GFF1952 at 608.143 kb on - strand, within GFF1952 at 608.144 kb on + strand, within GFF1952 at 608.145 kb on - strand, within GFF1952 at 608.199 kb on + strand, within GFF1952 at 608.200 kb on - strand, within GFF1952 at 608.804 kb on - strand, within GFF1953 at 608.839 kb on + strand, within GFF1953 at 608.840 kb on - strand, within GFF1953 at 608.915 kb on - strand, within GFF1953 at 608.915 kb on - strand, within GFF1953 at 609.052 kb on + strand, within GFF1953 at 609.052 kb on + strand, within GFF1953 at 609.053 kb on - strand, within GFF1953 at 609.152 kb on - strand, within GFF1953 at 609.280 kb on + strand, within GFF1953 at 609.280 kb on + strand, within GFF1953 at 609.281 kb on - strand, within GFF1953 at 609.307 kb on + strand, within GFF1953 at 609.308 kb on - strand, within GFF1953 at 609.308 kb on - strand, within GFF1953
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 606,284 + +1.0 606,611 + GFF1951 0.34 -0.9 606,612 - GFF1951 0.35 -0.2 606,612 - GFF1951 0.35 -0.3 606,704 + GFF1951 0.49 -0.5 607,208 + -0.3 607,393 - GFF1952 0.15 +0.2 607,461 + GFF1952 0.21 -0.1 607,461 + GFF1952 0.21 -0.2 607,462 - GFF1952 0.21 -0.6 607,603 - GFF1952 0.34 +0.2 607,782 + GFF1952 0.50 -0.7 607,782 + GFF1952 0.50 -0.2 607,783 - GFF1952 0.50 +0.0 607,783 - GFF1952 0.50 -0.3 607,783 - GFF1952 0.50 -0.6 607,845 + GFF1952 0.56 -0.0 607,846 - GFF1952 0.56 -0.3 607,846 - GFF1952 0.56 +0.3 607,875 + GFF1952 0.59 +1.8 607,875 + GFF1952 0.59 +1.1 608,090 + GFF1952 0.78 +0.3 608,090 + GFF1952 0.78 -0.8 608,091 - GFF1952 0.78 +0.5 608,143 - GFF1952 0.83 +0.4 608,143 - GFF1952 0.83 +0.4 608,143 - GFF1952 0.83 +0.1 608,143 - GFF1952 0.83 +0.7 608,143 - GFF1952 0.83 -1.3 608,144 + GFF1952 0.83 +0.9 608,145 - GFF1952 0.83 -0.3 608,199 + GFF1952 0.88 -0.3 608,200 - GFF1952 0.88 +0.1 608,804 - GFF1953 0.34 -0.2 608,839 + GFF1953 0.37 -0.7 608,840 - GFF1953 0.37 -0.1 608,915 - GFF1953 0.43 +0.5 608,915 - GFF1953 0.43 +0.0 609,052 + GFF1953 0.54 +0.1 609,052 + GFF1953 0.54 -0.0 609,053 - GFF1953 0.54 -0.8 609,152 - GFF1953 0.61 -0.2 609,280 + GFF1953 0.71 -1.3 609,280 + GFF1953 0.71 -0.1 609,281 - GFF1953 0.71 +0.6 609,307 + GFF1953 0.73 -0.9 609,308 - GFF1953 0.73 +0.5 609,308 - GFF1953 0.73 -0.1
Or see this region's nucleotide sequence