Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1948 and GFF1949 are separated by 235 nucleotides GFF1949 and GFF1950 are separated by 154 nucleotides GFF1950 and GFF1951 are separated by 252 nucleotides
GFF1948 - hypothetical protein, at 603,800 to 604,513
GFF1948
GFF1949 - Rhomboid protease GlpG, at 604,749 to 605,552
GFF1949
GFF1950 - Inosine-5'-monophosphate dehydrogenase, at 605,707 to 606,138
GFF1950
GFF1951 - Peroxiredoxin, at 606,391 to 607,029
GFF1951
Position (kb) 604
605
606 Strain fitness (log2 ratio) -1
0
1 at 603.749 kb on + strand at 603.990 kb on - strand, within GFF1948 at 604.010 kb on + strand, within GFF1948 at 604.010 kb on + strand, within GFF1948 at 604.010 kb on + strand, within GFF1948 at 604.011 kb on - strand, within GFF1948 at 604.011 kb on - strand, within GFF1948 at 604.011 kb on - strand, within GFF1948 at 604.011 kb on - strand, within GFF1948 at 604.011 kb on - strand, within GFF1948 at 604.041 kb on - strand, within GFF1948 at 604.106 kb on + strand, within GFF1948 at 604.148 kb on + strand, within GFF1948 at 604.149 kb on - strand, within GFF1948 at 604.149 kb on - strand, within GFF1948 at 604.266 kb on - strand, within GFF1948 at 604.419 kb on - strand, within GFF1948 at 604.419 kb on - strand, within GFF1948 at 604.825 kb on - strand at 604.959 kb on + strand, within GFF1949 at 604.959 kb on + strand, within GFF1949 at 605.007 kb on + strand, within GFF1949 at 605.200 kb on - strand, within GFF1949 at 605.200 kb on - strand, within GFF1949 at 605.692 kb on - strand at 605.692 kb on - strand at 606.076 kb on + strand, within GFF1950 at 606.076 kb on + strand, within GFF1950 at 606.077 kb on - strand, within GFF1950 at 606.077 kb on - strand, within GFF1950 at 606.121 kb on + strand at 606.122 kb on - strand at 606.122 kb on - strand at 606.122 kb on - strand at 606.284 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 603,749 + +0.0 603,990 - GFF1948 0.27 +0.4 604,010 + GFF1948 0.29 +1.0 604,010 + GFF1948 0.29 -0.4 604,010 + GFF1948 0.29 +0.7 604,011 - GFF1948 0.30 +0.1 604,011 - GFF1948 0.30 -0.1 604,011 - GFF1948 0.30 -0.2 604,011 - GFF1948 0.30 +0.8 604,011 - GFF1948 0.30 -1.1 604,041 - GFF1948 0.34 -1.5 604,106 + GFF1948 0.43 +0.6 604,148 + GFF1948 0.49 +1.2 604,149 - GFF1948 0.49 +0.1 604,149 - GFF1948 0.49 -0.3 604,266 - GFF1948 0.65 -0.9 604,419 - GFF1948 0.87 -0.2 604,419 - GFF1948 0.87 -0.1 604,825 - +0.5 604,959 + GFF1949 0.26 +0.8 604,959 + GFF1949 0.26 +0.6 605,007 + GFF1949 0.32 -0.4 605,200 - GFF1949 0.56 -0.1 605,200 - GFF1949 0.56 +0.3 605,692 - +0.2 605,692 - +0.5 606,076 + GFF1950 0.85 +0.1 606,076 + GFF1950 0.85 +0.3 606,077 - GFF1950 0.86 -0.1 606,077 - GFF1950 0.86 -0.0 606,121 + +0.9 606,122 - -0.5 606,122 - -0.1 606,122 - +0.7 606,284 + +1.0
Or see this region's nucleotide sequence