Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1940 and GFF1941 are separated by 3 nucleotides GFF1941 and GFF1942 are separated by 154 nucleotides GFF1942 and GFF1943 are separated by 277 nucleotides GFF1943 and GFF1944 overlap by 1 nucleotides
GFF1940 - Multifunctional CCA protein, at 595,594 to 596,460
GFF1940
GFF1941 - putative chaperone CsaA, at 596,464 to 596,823
GFF1941
GFF1942 - hypothetical protein, at 596,978 to 597,781
GFF1942
GFF1943 - hypothetical protein, at 598,059 to 598,289
GFF1943
GFF1944 - hypothetical protein, at 598,289 to 598,696
GFF1944
Position (kb) 596
597
598 Strain fitness (log2 ratio) -1
0
1 at 596.063 kb on + strand, within GFF1940 at 596.285 kb on - strand, within GFF1940 at 596.637 kb on - strand, within GFF1941 at 596.851 kb on + strand at 596.852 kb on - strand at 596.852 kb on - strand at 596.852 kb on - strand at 596.853 kb on + strand at 596.853 kb on + strand at 596.853 kb on + strand at 596.853 kb on + strand at 596.854 kb on - strand at 596.854 kb on - strand at 597.065 kb on + strand, within GFF1942 at 597.065 kb on + strand, within GFF1942 at 597.065 kb on + strand, within GFF1942 at 597.065 kb on + strand, within GFF1942 at 597.066 kb on - strand, within GFF1942 at 597.066 kb on - strand, within GFF1942 at 597.066 kb on - strand, within GFF1942 at 597.101 kb on + strand, within GFF1942 at 597.101 kb on + strand, within GFF1942 at 597.101 kb on + strand, within GFF1942 at 597.102 kb on - strand, within GFF1942 at 597.123 kb on - strand, within GFF1942 at 597.203 kb on + strand, within GFF1942 at 597.203 kb on + strand, within GFF1942 at 597.203 kb on + strand, within GFF1942 at 597.203 kb on + strand, within GFF1942 at 597.203 kb on + strand, within GFF1942 at 597.204 kb on - strand, within GFF1942 at 597.204 kb on - strand, within GFF1942 at 597.230 kb on + strand, within GFF1942 at 597.236 kb on + strand, within GFF1942 at 597.236 kb on + strand, within GFF1942 at 597.236 kb on + strand, within GFF1942 at 597.236 kb on + strand, within GFF1942 at 597.237 kb on - strand, within GFF1942 at 597.237 kb on - strand, within GFF1942 at 597.237 kb on - strand, within GFF1942 at 597.237 kb on - strand, within GFF1942 at 597.239 kb on + strand, within GFF1942 at 597.326 kb on - strand, within GFF1942 at 597.629 kb on - strand, within GFF1942 at 597.629 kb on - strand, within GFF1942 at 597.666 kb on - strand, within GFF1942 at 597.726 kb on - strand at 597.726 kb on - strand at 597.857 kb on - strand at 597.869 kb on + strand at 597.966 kb on + strand at 597.966 kb on + strand at 598.026 kb on + strand at 598.304 kb on - strand at 598.330 kb on - strand, within GFF1944 at 598.416 kb on + strand, within GFF1944 at 598.416 kb on + strand, within GFF1944 at 598.416 kb on + strand, within GFF1944 at 598.417 kb on - strand, within GFF1944 at 598.417 kb on - strand, within GFF1944 at 598.547 kb on + strand, within GFF1944 at 598.642 kb on + strand, within GFF1944 at 598.644 kb on + strand, within GFF1944 at 598.644 kb on + strand, within GFF1944 at 598.645 kb on - strand, within GFF1944 at 598.645 kb on - strand, within GFF1944 at 598.645 kb on - strand, within GFF1944 at 598.654 kb on + strand, within GFF1944 at 598.655 kb on - strand, within GFF1944 at 598.750 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 596,063 + GFF1940 0.54 +0.3 596,285 - GFF1940 0.80 -1.4 596,637 - GFF1941 0.48 +0.5 596,851 + +0.5 596,852 - +0.8 596,852 - +0.2 596,852 - -1.2 596,853 + +0.6 596,853 + -0.4 596,853 + +0.1 596,853 + -0.0 596,854 - -0.3 596,854 - -0.3 597,065 + GFF1942 0.11 +0.2 597,065 + GFF1942 0.11 +1.0 597,065 + GFF1942 0.11 +0.3 597,065 + GFF1942 0.11 +0.2 597,066 - GFF1942 0.11 +0.0 597,066 - GFF1942 0.11 -0.6 597,066 - GFF1942 0.11 -0.3 597,101 + GFF1942 0.15 +0.2 597,101 + GFF1942 0.15 -0.2 597,101 + GFF1942 0.15 +0.3 597,102 - GFF1942 0.15 +0.5 597,123 - GFF1942 0.18 -0.0 597,203 + GFF1942 0.28 -0.7 597,203 + GFF1942 0.28 -0.7 597,203 + GFF1942 0.28 +0.4 597,203 + GFF1942 0.28 -0.9 597,203 + GFF1942 0.28 -1.5 597,204 - GFF1942 0.28 +0.5 597,204 - GFF1942 0.28 -0.2 597,230 + GFF1942 0.31 -0.8 597,236 + GFF1942 0.32 -0.2 597,236 + GFF1942 0.32 -0.4 597,236 + GFF1942 0.32 -0.2 597,236 + GFF1942 0.32 -0.0 597,237 - GFF1942 0.32 -0.1 597,237 - GFF1942 0.32 +0.1 597,237 - GFF1942 0.32 -0.3 597,237 - GFF1942 0.32 +0.2 597,239 + GFF1942 0.32 +0.1 597,326 - GFF1942 0.43 -0.7 597,629 - GFF1942 0.81 +0.2 597,629 - GFF1942 0.81 +0.7 597,666 - GFF1942 0.86 -0.3 597,726 - -0.4 597,726 - -0.7 597,857 - +1.5 597,869 + -0.1 597,966 + +1.5 597,966 + +0.1 598,026 + -0.8 598,304 - +0.5 598,330 - GFF1944 0.10 -0.6 598,416 + GFF1944 0.31 -0.2 598,416 + GFF1944 0.31 -0.7 598,416 + GFF1944 0.31 -0.4 598,417 - GFF1944 0.31 -0.4 598,417 - GFF1944 0.31 +0.6 598,547 + GFF1944 0.63 +0.7 598,642 + GFF1944 0.87 +0.1 598,644 + GFF1944 0.87 +0.3 598,644 + GFF1944 0.87 -0.0 598,645 - GFF1944 0.87 -0.3 598,645 - GFF1944 0.87 +0.0 598,645 - GFF1944 0.87 +0.8 598,654 + GFF1944 0.89 -0.2 598,655 - GFF1944 0.90 +0.1 598,750 - +0.5
Or see this region's nucleotide sequence