Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1915 and GFF1916 are separated by 255 nucleotides GFF1916 and GFF1917 overlap by 4 nucleotides
GFF1915 - hypothetical protein, at 574,538 to 575,452
GFF1915
GFF1916 - putative transcriptional regulatory protein pdtaR, at 575,708 to 576,298
GFF1916
GFF1917 - Nitrate/nitrite binding protein NrtA, at 576,295 to 577,422
GFF1917
Position (kb) 575
576
577 Strain fitness (log2 ratio) -2
-1
0
1 at 574.893 kb on + strand, within GFF1915 at 575.562 kb on + strand at 575.563 kb on - strand at 575.563 kb on - strand at 575.660 kb on - strand at 575.722 kb on + strand at 575.722 kb on + strand at 575.723 kb on - strand at 575.849 kb on + strand, within GFF1916 at 575.849 kb on + strand, within GFF1916 at 575.850 kb on - strand, within GFF1916 at 575.850 kb on - strand, within GFF1916 at 576.017 kb on + strand, within GFF1916 at 576.017 kb on + strand, within GFF1916 at 576.018 kb on - strand, within GFF1916 at 576.189 kb on + strand, within GFF1916 at 576.206 kb on + strand, within GFF1916 at 576.207 kb on - strand, within GFF1916 at 576.583 kb on + strand, within GFF1917 at 576.614 kb on + strand, within GFF1917 at 576.615 kb on - strand, within GFF1917 at 576.615 kb on - strand, within GFF1917 at 576.706 kb on + strand, within GFF1917 at 576.706 kb on + strand, within GFF1917 at 576.707 kb on - strand, within GFF1917 at 576.727 kb on + strand, within GFF1917 at 576.727 kb on + strand, within GFF1917 at 576.727 kb on + strand, within GFF1917 at 577.234 kb on + strand, within GFF1917 at 577.234 kb on + strand, within GFF1917 at 577.234 kb on + strand, within GFF1917 at 577.234 kb on + strand, within GFF1917 at 577.235 kb on - strand, within GFF1917 at 577.235 kb on - strand, within GFF1917 at 577.235 kb on - strand, within GFF1917
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 574,893 + GFF1915 0.39 +0.5 575,562 + -0.0 575,563 - +0.6 575,563 - -1.2 575,660 - -0.1 575,722 + -1.8 575,722 + -0.9 575,723 - +0.2 575,849 + GFF1916 0.24 +0.1 575,849 + GFF1916 0.24 -0.8 575,850 - GFF1916 0.24 +1.5 575,850 - GFF1916 0.24 +0.4 576,017 + GFF1916 0.52 -0.5 576,017 + GFF1916 0.52 +0.4 576,018 - GFF1916 0.52 -0.1 576,189 + GFF1916 0.81 -1.1 576,206 + GFF1916 0.84 +0.5 576,207 - GFF1916 0.84 -0.1 576,583 + GFF1917 0.26 +0.0 576,614 + GFF1917 0.28 +0.5 576,615 - GFF1917 0.28 +0.4 576,615 - GFF1917 0.28 +0.0 576,706 + GFF1917 0.36 +1.0 576,706 + GFF1917 0.36 +0.8 576,707 - GFF1917 0.37 +0.3 576,727 + GFF1917 0.38 +0.3 576,727 + GFF1917 0.38 +1.1 576,727 + GFF1917 0.38 +0.3 577,234 + GFF1917 0.83 -0.4 577,234 + GFF1917 0.83 +0.6 577,234 + GFF1917 0.83 -0.8 577,234 + GFF1917 0.83 +0.2 577,235 - GFF1917 0.83 -0.9 577,235 - GFF1917 0.83 -0.5 577,235 - GFF1917 0.83 +0.8
Or see this region's nucleotide sequence