Strain Fitness in Xanthobacter sp. DMC5 around GFF190

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF188 and GFF189 overlap by 1 nucleotidesGFF189 and GFF190 overlap by 1 nucleotidesGFF190 and GFF191 overlap by 4 nucleotidesGFF191 and GFF192 overlap by 4 nucleotides GFF188 - N-carbamoyl-L-amino-acid hydrolase, at 197,286 to 198,536 GFF188 GFF189 - Oligopeptide transport ATP-binding protein OppD, at 198,536 to 199,525 GFF189 GFF190 - Glutamyl-tRNA(Gln) amidotransferase subunit A, at 199,525 to 200,967 GFF190 GFF191 - hypothetical protein, at 200,964 to 201,179 GFF191 GFF192 - Vitamin B12 import ATP-binding protein BtuD, at 201,176 to 202,237 GFF192 Position (kb) 199 200 201Strain fitness (log2 ratio) -2 -1 0 1at 198.539 kb on - strandat 198.575 kb on + strandat 198.575 kb on + strandat 198.575 kb on + strandat 198.575 kb on + strandat 198.575 kb on + strandat 198.576 kb on - strandat 198.576 kb on - strandat 198.576 kb on - strandat 198.831 kb on + strand, within GFF189at 198.831 kb on + strand, within GFF189at 198.831 kb on + strand, within GFF189at 198.831 kb on + strand, within GFF189at 198.831 kb on + strand, within GFF189at 198.832 kb on - strand, within GFF189at 198.832 kb on - strand, within GFF189at 198.832 kb on - strand, within GFF189at 198.832 kb on - strand, within GFF189at 198.832 kb on - strand, within GFF189at 198.832 kb on - strand, within GFF189at 198.832 kb on - strand, within GFF189at 198.832 kb on - strand, within GFF189at 199.065 kb on + strand, within GFF189at 199.065 kb on + strand, within GFF189at 199.197 kb on + strand, within GFF189at 199.197 kb on + strand, within GFF189at 199.198 kb on - strand, within GFF189at 199.198 kb on - strand, within GFF189at 199.198 kb on - strand, within GFF189at 199.198 kb on - strand, within GFF189at 199.198 kb on - strand, within GFF189at 199.542 kb on + strandat 199.556 kb on + strandat 199.691 kb on + strand, within GFF190at 199.691 kb on + strand, within GFF190at 199.691 kb on + strand, within GFF190at 199.692 kb on - strand, within GFF190at 199.692 kb on - strand, within GFF190at 199.867 kb on + strand, within GFF190at 199.868 kb on - strand, within GFF190at 199.880 kb on + strand, within GFF190at 199.881 kb on - strand, within GFF190at 199.881 kb on - strand, within GFF190at 199.881 kb on - strand, within GFF190at 199.937 kb on + strand, within GFF190at 199.938 kb on - strand, within GFF190at 199.938 kb on - strand, within GFF190at 200.129 kb on + strand, within GFF190at 200.129 kb on + strand, within GFF190at 200.129 kb on + strand, within GFF190at 200.129 kb on + strand, within GFF190at 200.129 kb on + strand, within GFF190at 200.130 kb on - strand, within GFF190at 200.130 kb on - strand, within GFF190at 200.130 kb on - strand, within GFF190at 200.189 kb on + strand, within GFF190at 200.368 kb on + strand, within GFF190at 200.429 kb on + strand, within GFF190at 200.430 kb on - strand, within GFF190at 200.430 kb on - strand, within GFF190at 200.684 kb on + strand, within GFF190at 200.685 kb on - strand, within GFF190at 201.458 kb on - strand, within GFF192at 201.522 kb on + strand, within GFF192at 201.522 kb on + strand, within GFF192at 201.522 kb on + strand, within GFF192at 201.523 kb on - strand, within GFF192at 201.523 kb on - strand, within GFF192at 201.549 kb on + strand, within GFF192at 201.549 kb on + strand, within GFF192at 201.550 kb on - strand, within GFF192at 201.585 kb on + strand, within GFF192at 201.586 kb on - strand, within GFF192at 201.586 kb on - strand, within GFF192at 201.586 kb on - strand, within GFF192at 201.586 kb on - strand, within GFF192at 201.616 kb on + strand, within GFF192at 201.616 kb on + strand, within GFF192at 201.903 kb on + strand, within GFF192at 201.903 kb on + strand, within GFF192at 201.903 kb on + strand, within GFF192at 201.903 kb on + strand, within GFF192at 201.903 kb on + strand, within GFF192at 201.903 kb on + strand, within GFF192at 201.903 kb on + strand, within GFF192at 201.904 kb on - strand, within GFF192at 201.904 kb on - strand, within GFF192at 201.904 kb on - strand, within GFF192at 201.904 kb on - strand, within GFF192at 201.904 kb on - strand, within GFF192at 201.904 kb on - strand, within GFF192at 201.904 kb on - strand, within GFF192at 201.904 kb on - strand, within GFF192at 201.960 kb on + strand, within GFF192

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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198,539 - -0.9
198,575 + -0.2
198,575 + +0.5
198,575 + -0.6
198,575 + +0.4
198,575 + +0.0
198,576 - -0.6
198,576 - -0.5
198,576 - +0.7
198,831 + GFF189 0.30 +0.3
198,831 + GFF189 0.30 +0.1
198,831 + GFF189 0.30 -0.1
198,831 + GFF189 0.30 -0.7
198,831 + GFF189 0.30 +0.3
198,832 - GFF189 0.30 -0.6
198,832 - GFF189 0.30 -0.7
198,832 - GFF189 0.30 -1.3
198,832 - GFF189 0.30 +0.2
198,832 - GFF189 0.30 -0.4
198,832 - GFF189 0.30 -0.7
198,832 - GFF189 0.30 -0.1
198,832 - GFF189 0.30 -0.8
199,065 + GFF189 0.53 +0.3
199,065 + GFF189 0.53 -0.1
199,197 + GFF189 0.67 -0.9
199,197 + GFF189 0.67 +0.5
199,198 - GFF189 0.67 +0.4
199,198 - GFF189 0.67 +0.7
199,198 - GFF189 0.67 -0.8
199,198 - GFF189 0.67 -0.5
199,198 - GFF189 0.67 +0.2
199,542 + -1.4
199,556 + +0.1
199,691 + GFF190 0.12 +0.8
199,691 + GFF190 0.12 +0.0
199,691 + GFF190 0.12 +0.3
199,692 - GFF190 0.12 +0.9
199,692 - GFF190 0.12 +0.3
199,867 + GFF190 0.24 -0.1
199,868 - GFF190 0.24 +1.1
199,880 + GFF190 0.25 +0.0
199,881 - GFF190 0.25 -0.4
199,881 - GFF190 0.25 -0.0
199,881 - GFF190 0.25 -1.1
199,937 + GFF190 0.29 -0.3
199,938 - GFF190 0.29 +0.8
199,938 - GFF190 0.29 -0.1
200,129 + GFF190 0.42 -0.8
200,129 + GFF190 0.42 -0.0
200,129 + GFF190 0.42 -0.8
200,129 + GFF190 0.42 -1.9
200,129 + GFF190 0.42 -0.2
200,130 - GFF190 0.42 -0.7
200,130 - GFF190 0.42 +0.1
200,130 - GFF190 0.42 +0.5
200,189 + GFF190 0.46 +0.9
200,368 + GFF190 0.58 -0.0
200,429 + GFF190 0.63 +0.6
200,430 - GFF190 0.63 +0.3
200,430 - GFF190 0.63 +0.6
200,684 + GFF190 0.80 -0.4
200,685 - GFF190 0.80 +0.5
201,458 - GFF192 0.27 +0.2
201,522 + GFF192 0.33 +0.6
201,522 + GFF192 0.33 +0.4
201,522 + GFF192 0.33 +0.1
201,523 - GFF192 0.33 +0.7
201,523 - GFF192 0.33 +0.5
201,549 + GFF192 0.35 -0.5
201,549 + GFF192 0.35 -0.9
201,550 - GFF192 0.35 +0.0
201,585 + GFF192 0.39 +0.2
201,586 - GFF192 0.39 +0.2
201,586 - GFF192 0.39 +0.9
201,586 - GFF192 0.39 +0.3
201,586 - GFF192 0.39 -0.2
201,616 + GFF192 0.41 +0.7
201,616 + GFF192 0.41 +0.4
201,903 + GFF192 0.68 +0.2
201,903 + GFF192 0.68 -0.6
201,903 + GFF192 0.68 -0.6
201,903 + GFF192 0.68 -0.1
201,903 + GFF192 0.68 +0.2
201,903 + GFF192 0.68 +0.3
201,903 + GFF192 0.68 -0.4
201,904 - GFF192 0.69 -1.1
201,904 - GFF192 0.69 +0.5
201,904 - GFF192 0.69 -0.4
201,904 - GFF192 0.69 +0.1
201,904 - GFF192 0.69 -0.6
201,904 - GFF192 0.69 -0.5
201,904 - GFF192 0.69 +0.1
201,904 - GFF192 0.69 -0.3
201,960 + GFF192 0.74 -0.4

Or see this region's nucleotide sequence