Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1892 and GFF1893 overlap by 1 nucleotides GFF1893 and GFF1894 are separated by 133 nucleotides GFF1894 and GFF1895 are separated by 121 nucleotides GFF1895 and GFF1896 are separated by 18 nucleotides
GFF1892 - dITP/XTP pyrophosphatase, at 552,343 to 552,975
GFF1892
GFF1893 - Ribonuclease PH, at 552,975 to 553,712
GFF1893
GFF1894 - Heat-inducible transcription repressor HrcA, at 553,846 to 554,946
GFF1894
GFF1895 - Protein GrpE, at 555,068 to 555,715
GFF1895
GFF1896 - hypothetical protein, at 555,734 to 556,168
GFF1896
Position (kb) 553
554
555 Strain fitness (log2 ratio) -1
0
1
2 at 553.190 kb on - strand, within GFF1893 at 553.501 kb on + strand, within GFF1893 at 553.502 kb on - strand, within GFF1893 at 553.696 kb on - strand at 553.726 kb on - strand at 553.808 kb on + strand at 553.808 kb on + strand at 553.809 kb on - strand at 553.939 kb on + strand at 554.056 kb on + strand, within GFF1894 at 554.056 kb on + strand, within GFF1894 at 554.056 kb on + strand, within GFF1894 at 554.057 kb on - strand, within GFF1894 at 554.235 kb on - strand, within GFF1894 at 554.864 kb on - strand at 554.864 kb on - strand at 554.951 kb on + strand at 555.735 kb on + strand at 555.735 kb on + strand at 555.735 kb on + strand at 555.736 kb on - strand at 555.739 kb on + strand at 555.853 kb on + strand, within GFF1896 at 555.855 kb on + strand, within GFF1896 at 555.856 kb on - strand, within GFF1896 at 555.916 kb on - strand, within GFF1896
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 553,190 - GFF1893 0.29 +1.9 553,501 + GFF1893 0.71 +1.1 553,502 - GFF1893 0.71 +1.5 553,696 - +0.0 553,726 - -0.6 553,808 + -0.2 553,808 + +1.7 553,809 - +0.1 553,939 + +0.2 554,056 + GFF1894 0.19 +0.1 554,056 + GFF1894 0.19 +0.3 554,056 + GFF1894 0.19 +0.1 554,057 - GFF1894 0.19 +0.8 554,235 - GFF1894 0.35 -0.3 554,864 - -1.7 554,864 - -0.7 554,951 + +0.0 555,735 + -0.3 555,735 + -0.9 555,735 + -0.7 555,736 - -0.1 555,739 + +0.5 555,853 + GFF1896 0.27 +0.1 555,855 + GFF1896 0.28 -0.5 555,856 - GFF1896 0.28 -1.5 555,916 - GFF1896 0.42 -1.0
Or see this region's nucleotide sequence