Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1881 and GFF1882 are separated by 179 nucleotides GFF1882 and GFF1883 are separated by 32 nucleotides GFF1883 and GFF1884 overlap by 56 nucleotides GFF1884 and GFF1885 are separated by 39 nucleotides
GFF1881 - RNA pyrophosphohydrolase, at 543,918 to 544,358
GFF1881
GFF1882 - hypothetical protein, at 544,538 to 544,672
GFF1882
GFF1883 - hypothetical protein, at 544,705 to 545,298
GFF1883
GFF1884 - hypothetical protein, at 545,243 to 547,276
GFF1884
GFF1885 - hypothetical protein, at 547,316 to 548,278
GFF1885
Position (kb) 545
546
547
548 Strain fitness (log2 ratio) -1
0
1 at 544.397 kb on + strand at 544.397 kb on + strand at 544.558 kb on - strand, within GFF1882 at 544.676 kb on + strand at 545.352 kb on + strand at 545.353 kb on - strand at 545.353 kb on - strand at 545.353 kb on - strand at 545.373 kb on - strand at 545.373 kb on - strand at 545.413 kb on - strand at 545.500 kb on - strand, within GFF1884 at 545.638 kb on - strand, within GFF1884 at 545.883 kb on + strand, within GFF1884 at 545.883 kb on + strand, within GFF1884 at 545.884 kb on - strand, within GFF1884 at 545.884 kb on - strand, within GFF1884 at 545.884 kb on - strand, within GFF1884 at 545.950 kb on - strand, within GFF1884 at 546.007 kb on - strand, within GFF1884 at 546.156 kb on + strand, within GFF1884 at 546.157 kb on - strand, within GFF1884 at 546.157 kb on - strand, within GFF1884 at 546.157 kb on - strand, within GFF1884 at 546.253 kb on + strand, within GFF1884 at 546.253 kb on + strand, within GFF1884 at 546.346 kb on - strand, within GFF1884 at 546.346 kb on - strand, within GFF1884 at 546.474 kb on + strand, within GFF1884 at 546.474 kb on + strand, within GFF1884 at 546.474 kb on + strand, within GFF1884 at 546.474 kb on + strand, within GFF1884 at 546.475 kb on - strand, within GFF1884 at 546.494 kb on + strand, within GFF1884 at 547.232 kb on + strand at 547.233 kb on - strand at 547.233 kb on - strand at 547.830 kb on - strand, within GFF1885 at 547.947 kb on - strand, within GFF1885 at 548.180 kb on - strand, within GFF1885 at 548.235 kb on - strand at 548.247 kb on - strand at 548.273 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 544,397 + -0.4 544,397 + -0.2 544,558 - GFF1882 0.15 +1.1 544,676 + -0.6 545,352 + +0.2 545,353 - +0.3 545,353 - -0.1 545,353 - +0.4 545,373 - -0.3 545,373 - -0.0 545,413 - -0.4 545,500 - GFF1884 0.13 +0.6 545,638 - GFF1884 0.19 +0.3 545,883 + GFF1884 0.31 +0.3 545,883 + GFF1884 0.31 +0.3 545,884 - GFF1884 0.32 -0.7 545,884 - GFF1884 0.32 -0.2 545,884 - GFF1884 0.32 -0.7 545,950 - GFF1884 0.35 +0.5 546,007 - GFF1884 0.38 +0.5 546,156 + GFF1884 0.45 -0.1 546,157 - GFF1884 0.45 -0.1 546,157 - GFF1884 0.45 -0.7 546,157 - GFF1884 0.45 -0.6 546,253 + GFF1884 0.50 +0.5 546,253 + GFF1884 0.50 +0.7 546,346 - GFF1884 0.54 +0.0 546,346 - GFF1884 0.54 +0.5 546,474 + GFF1884 0.61 -0.0 546,474 + GFF1884 0.61 -0.2 546,474 + GFF1884 0.61 -1.5 546,474 + GFF1884 0.61 +1.1 546,475 - GFF1884 0.61 -1.0 546,494 + GFF1884 0.62 -1.2 547,232 + +0.3 547,233 - +0.2 547,233 - +0.1 547,830 - GFF1885 0.53 -1.1 547,947 - GFF1885 0.66 -0.5 548,180 - GFF1885 0.90 +0.1 548,235 - -0.1 548,247 - -0.7 548,273 + +0.3
Or see this region's nucleotide sequence